Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77410 1051 / 0 BGAL16 beta-galactosidase 16 (.1) AT5G63800 924 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT4G36360 768 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G16730 765 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 756 / 0 BGAL11 beta-galactosidase 11 (.1) AT3G13750 733 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 733 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G38590 720 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT2G32810 701 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G26140 657 / 0 BGAL12 beta-galactosidase 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080700 [exp] 1152 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 1063 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G069200 [exp] 955 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 821 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.004G174800 [exp] 817 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.007G018100 [exp] 760 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 753 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G099800 [exp] 741 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.006G144500 [exp] 740 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028538 [exp] 1148 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 1097 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 1028 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10008259 [exp] 916 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10033502 [exp] 860 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10014126 [exp] 800 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10020875 [exp] 794 / 0 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10033500 [exp] 768 / 0 AT5G63800 757 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 766 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 755 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain CL0202 [poplar] [flax] GBD PF13364 [poplar] [flax] BetaGal_dom4_5 Beta-galactosidase jelly roll domain
Representative CDS sequence Show only first row Show all	>Potri.005G180600.1 pacid=42803780 polypeptide=Potri.005G180600.1.p locus=Potri.005G180600 ID=Potri.005G180600.1.v4.1 annot-version=v4.1 ATGGTGCGCATGCTCTATTGGCTTACTGCAATATTGCTGCTATGGACGGCGACGGGCACAGTCCGTGGAGGCAACGTAACCTACGATGGAAGATCCTTGA TCATCAATGGCCAACACAAGATTCTCTTTTCTGGTTCAATCCACTATCCTCGCAGCACTCCTGATATGTGGTCATCTTTGATTTCCAAAGCCAAGGCTGG AGGCATAGACGTTATACAGACCTATGTGTTTTGGAACCTGCACGAGCCACAACAAGGGCAGTTTTATTTCAATGGAAGAGCGGACTTAGTAAGGTTCGTG AAGGAAATCCAAGCACAAGGCCTCTATGCTTGCCTTAGAATTGGGCCCTTTATTGAGAGTGAATGGACATACGGGGGACTACCATTTTGGCTGCATGACA TTCCGGGCATGGTCTACCGATCTGATAACCAACCTTTCAAGTATCACATGAAAAGGTTTGTATCGAGAATAGTAAGCATGATGAAATCAGAGAAATTATA TGCTTCACAAGGAGGGCCAATCATACTATCACAGGTTGAGAACGAGTACAAAAATGTTGAAGCAGCTTTTCATGAGAAAGGGCCAAGTTATGTTCGTTGG GCTGCATTGATGGCCGTAAATCTTCATACTGGAGTGCCCTGGGTGATGTGTAAGCAGGATGATGCTCCTGACCCAGTGATCAATTCATGCAATGGAATGC GATGTGGAGAAACATTTGCAGGACCAAACTCACCGAATAAGCCATCAATATGGACTGAGGACTGGACCAGTTTCTATCAGGTATACGGGGAAGAAACATA CATGAGATCAGCTCAAGACATAGCATTTCATGTTGCTTTATTCATTGCAAAAACAGGAAGTTATGTAAACTATTACATGTATCATGGAGGAACCAATTTT GGAAGAACAGCCTCTGCATTTACAATAACAAGTTACTATGACCAAGCCCCTCTTGACGAGTATGGTTTAATTAGGCAGCCAAAATGGGGTCACCTGAAGG AATTACATGCTGCAATAAAGTCATGTTCAAAGCTGCTACTTCATGGAGCACATAAAACTTTTTCTTTGGGGCCACTACAACAAGCGTATGTCTTCCAAGG AAATTCAGGACAATGTGCTGCCTTTCTAGTGAACAATGACGGCAAACAAGAAGTAGAAGTCCTCTTTCAAAGCAATTCATATAAGTTGCCTCAAAAGTCT ATTAGCATTCTACCAGACTGCAAGACCATGACCTTTAATACAGCAAAAGTAAATGCACAATATACTACAAGATCAATGAAACCAAACCAAAAGTTCAACT CGGTTGGGAAATGGGAAGAGTATAATGAACCTATCCCAGAATTTGACAAAACATCTTTGAGAGCAAACAGATTGTTAGAGCACATGAGTACAACAAAAGA TACATCTGACTACCTATGGTACACTTTCAGGTTTCAACAAAATCTTCCCAATGCACAGTCTGTATTTAATGCCCAATCACATGGACACGTTTTGCATGCA TATGTAAATGGAGTACATGCTGGCTTTGGTCACGGAAGTCATCAGAATACAAGTTTCAGTCTGCAGACTACAGTTCGTCTAAAAAATGGAACAAATAATG TTGCCCTACTTAGTGCAACAGTTGGATTACCGGATTCAGGAGCATATCTCGAGCGCAGGGTTGCTGGATTGCGTAGAGTAAGGATTCAAAACAAGGATTT CACAACTTACACGTGGGGATACCAGGTTGGGCTGCTAGGAGAGAGGTTACAAATTTACACGGAGAATGGATCTAACAAGGTTAAGTGGAACAAGTTAGGA ACCAATCGACCACTCATGTGGTACAAGACTCTCTTTGACGCACCTGCAGGAAATGATCCAGTGGCACTAAACCTTGGTTCCATGGGAAAGGGAGAGGCTT GGGTTAATGGCCAAAGCATTGGCCGATATTGGGTATCATTCCATACTTCCCAAGGAAGTCCTTCACAAACATGGTACAACATCCCTCGAGCTTTCCTCAA ACCGACTGGCAACCTGTTAGTTCTGCTAGAAGAAGAAAAAGGATACCCTCCAGGGATTACAGTAGACACTGTTTCAGTTACAAAAGTATGTGGCTATGCA TCCGAATCACACTTGTCTGCAGTTCAGCTTAGTTGTCCTCTAAAAAGAAACATTTCTAGTATCATTTTTGCAAGCTTTGGAACCCCCTCGGGTAATTGTG AAAGTTACGCTATTGGAAACTGTCACTCATCTAGTTCTAAAGCTAATGTAGAAAAGGCTTGTATAGGGAAGAGAAGCTGTTCCATCCCTCAATCAAATCA TTTTTTTGGTGGCGACCCATGTCCAGGCATTCCTAAAGTTCTGCTGGTTGAAGCCAAATGCACATGA
AA sequence Show only first row Show all	>Potri.005G180600.1 pacid=42803780 polypeptide=Potri.005G180600.1.p locus=Potri.005G180600 ID=Potri.005G180600.1.v4.1 annot-version=v4.1 MVRMLYWLTAILLLWTATGTVRGGNVTYDGRSLIINGQHKILFSGSIHYPRSTPDMWSSLISKAKAGGIDVIQTYVFWNLHEPQQGQFYFNGRADLVRFV KEIQAQGLYACLRIGPFIESEWTYGGLPFWLHDIPGMVYRSDNQPFKYHMKRFVSRIVSMMKSEKLYASQGGPIILSQVENEYKNVEAAFHEKGPSYVRW AALMAVNLHTGVPWVMCKQDDAPDPVINSCNGMRCGETFAGPNSPNKPSIWTEDWTSFYQVYGEETYMRSAQDIAFHVALFIAKTGSYVNYYMYHGGTNF GRTASAFTITSYYDQAPLDEYGLIRQPKWGHLKELHAAIKSCSKLLLHGAHKTFSLGPLQQAYVFQGNSGQCAAFLVNNDGKQEVEVLFQSNSYKLPQKS ISILPDCKTMTFNTAKVNAQYTTRSMKPNQKFNSVGKWEEYNEPIPEFDKTSLRANRLLEHMSTTKDTSDYLWYTFRFQQNLPNAQSVFNAQSHGHVLHA YVNGVHAGFGHGSHQNTSFSLQTTVRLKNGTNNVALLSATVGLPDSGAYLERRVAGLRRVRIQNKDFTTYTWGYQVGLLGERLQIYTENGSNKVKWNKLG TNRPLMWYKTLFDAPAGNDPVALNLGSMGKGEAWVNGQSIGRYWVSFHTSQGSPSQTWYNIPRAFLKPTGNLLVLLEEEKGYPPGITVDTVSVTKVCGYA SESHLSAVQLSCPLKRNISSIIFASFGTPSGNCESYAIGNCHSSSSKANVEKACIGKRSCSIPQSNHFFGGDPCPGIPKVLLVEAKCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.005G180600 [exp]	0	1
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	1.00	0.8020
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	22.09	0.7546	NPH4.1
AT2G36650			unknown protein		Potri.005G098400 [exp]	25.41	0.7204
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	27.11	0.7563
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.002G047200 [exp]	27.49	0.7427
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Potri.011G143000 [exp]	28.00	0.7403
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	28.19	0.7772
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.006G262200 [exp]	29.06	0.7594	PKL.2
AT1G27595			unknown protein		Potri.002G107400 [exp]	30.13	0.7608
AT5G53620			unknown protein		Potri.015G006700 [exp]	36.41	0.7402

Compare expression of checked genes

Potri.005G180600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.