Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	OGG1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21710 452 / 2e-159 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) AT3G47830 54 / 8e-08 DNA glycosylase superfamily protein (.1) AT4G34060 47 / 1e-05 DML3 demeter-like protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071300 [exp] 45 / 4e-05 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1) Potri.010G234400 [exp] 43 / 0.0005 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018137 [exp] 505 / 8e-179 AT1G21710 461 / 7e-162 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Lus10028539 [exp] 500 / 1e-177 AT1G21710 464 / 1e-163 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Lus10034120 [exp] 50 / 2e-06 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 46 / 4e-05 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [poplar] [flax] HHH PF00730 [poplar] [flax] HhH-GPD HhH-GPD superfamily base excision DNA repair protein CL0407 [poplar] [flax] TBP-like PF07934 [poplar] [flax] OGG_N 8-oxoguanine DNA glycosylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G180700.2 pacid=42805056 polypeptide=Potri.005G180700.2.p locus=Potri.005G180700 ID=Potri.005G180700.2.v4.1 annot-version=v4.1 ATGAAGCGAGCCAGACCCACGCCGCCACCCGCCACCCCCACCACCAGCAGATCATCACCAATACCACCTCTGCCAACACCACCACAACCCCGCCACTCCT CCAAAAAACACCAAAAAATAATTTTCAAGCCAACAAACTGGGCCCCAGTCAACCTGACCCAGTCAGAACTCTCACTCCCACTCACATTCCCCACCGGCCA AACCTTCCGTTGGAAACAAACCGGTCCCCTCCAATACACAGGCAGTCTCGGTCGTCACTTAATCTCCCTTAAGCACCATCAAAACGGCGACGTTTATTAC CAAATCCACCATTCCCCCTCCCAATCCGCTGCCAAATCAGCTCTCCTCAGTTTCCTCAACACCAACATCTCACTAACCGAAATGTGGCACGGGTTCGCCG CCGCTGATTCGCGGTTCGCTGAATTGGCACAGCATTTTAAAGGAGCTAGGGTTTTGAGGCAGGATCCACTTGAGTGCTTGATTCAATTTTTATGCTCTTC GAATAATAACATTTCGAGGATCACTAAAATGGTGGATTTCGTGTCCTCATTAGGTGATCATTTGGGGAATGTTGAGGGTTTTGAGTTCCACGCGTTTCCT TCCCTGGAGAGATTGGCTTTGGTTACGGAGCAGCAGCTAAGAGAGGCTGGTTTTGGTTATAGAGCTAAATACGTTACTGGAACGGTGAATGCTTTGCAAT CGAAACCGGAAGGAGGTGTGAAATGGCTTGAATCTCTTCGAAAATTACAACTCCAAATGGTGATTGATTCACTTTGTACATTACCTGGAATTGGTTTAAA AGTGGCATCCTGTATTGCTCTGTTTTCTCTCGATCAACATCATGCCATCCCTGTTGATACGCACGTGTGGCGGATTGCTACGACACACCTTGTACCTGAG CTTGCTGGTGCTAGCCTGACACCTAAGCTCTGCGGCCGTGTGGCAGATGCGTTTGTGACTAAGTATGGGAAATATGCTGGATGGGCTCAGACATTACTTT TCATTGCTGAATTGCCCTCGCAGAAGGCCCTTCTACCATCAGTGACTGTCAATGAAAAGAAATCCTCTAAGAAAAGAGGCAGCAAAGCACAACGTGGCCC AAGCAGCACTGAGGAAGGAGGCCAGCAAGCAGATTGA
AA sequence Show only first row Show all	>Potri.005G180700.2 pacid=42805056 polypeptide=Potri.005G180700.2.p locus=Potri.005G180700 ID=Potri.005G180700.2.v4.1 annot-version=v4.1 MKRARPTPPPATPTTSRSSPIPPLPTPPQPRHSSKKHQKIIFKPTNWAPVNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGSLGRHLISLKHHQNGDVYY QIHHSPSQSAAKSALLSFLNTNISLTEMWHGFAAADSRFAELAQHFKGARVLRQDPLECLIQFLCSSNNNISRITKMVDFVSSLGDHLGNVEGFEFHAFP SLERLALVTEQQLREAGFGYRAKYVTGTVNALQSKPEGGVKWLESLRKLQLQMVIDSLCTLPGIGLKVASCIALFSLDQHHAIPVDTHVWRIATTHLVPE LAGASLTPKLCGRVADAFVTKYGKYAGWAQTLLFIAELPSQKALLPSVTVNEKKSSKKRGSKAQRGPSSTEEGGQQAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Potri.005G180700 [exp]	0	1	OGG1.1
AT1G09575			Protein of unknown function (D...		Potri.013G161300 [exp]	12.48	0.7255
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.008G005101 [exp]	13.56	0.6617
					Potri.019G016108 [exp]	14.62	0.6110
AT1G31500			DNAse I-like superfamily prote...		Potri.003G106000 [exp]	15.65	0.7118
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176950 [exp]	17.32	0.7652
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.009G048000 [exp]	17.40	0.7302
AT3G59800			unknown protein		Potri.007G139900 [exp]	17.74	0.6895
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	22.58	0.7205
ATCG00700		ATCG00700.1, PS...	photosystem II reaction center...		Potri.019G028300 [exp]	23.45	0.6878
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108350 [exp]	23.55	0.6431

Compare expression of checked genes

Potri.005G180700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.