Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21660 313 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) AT4G12770 245 / 1e-71 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 245 / 1e-71 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36520 184 / 2e-49 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 178 / 2e-47 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G75100 120 / 1e-28 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 95 / 1e-20 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079200 [exp] 705 / 0 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G197600 [exp] 261 / 1e-76 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G217200 [exp] 247 / 6e-72 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G120700 [exp] 186 / 3e-50 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 180 / 3e-48 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 176 / 1e-46 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 171 / 3e-45 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 134 / 3e-33 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 125 / 4e-30 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018854 [exp] 363 / 8e-119 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 357 / 6e-116 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10016079 [exp] 249 / 7e-73 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012303 [exp] 246 / 7e-72 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016078 [exp] 233 / 3e-66 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012302 [exp] 233 / 3e-66 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10041769 [exp] 167 / 6e-44 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 144 / 3e-36 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 144 / 5e-36 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10033205 [exp] 136 / 2e-33 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G181700.2 pacid=42804061 polypeptide=Potri.005G181700.2.p locus=Potri.005G181700 ID=Potri.005G181700.2.v4.1 annot-version=v4.1 ATGGACGAGTTTGGTGTGTTAACAGAACGTTTTGGGTTAAAACCGCAAGGAAAATCGGCTCCAATGTCTGCATCGAGAGGAACCAATAACGCCCAAACTC GAGATTTCCCTTCTTCAAACCCGAAATCCAACTCATATTCTTCTAAATCAACTTACAACTCCAATTCATATAATGGGTCTTTCATGGATGATCGCGAAAC TCTCTTCAGCAATTCAAAATCCCAGAATTTTGGTGATGATTTTGACATTTTTGGTGGTTTTCAAAAGAATTCAAAACAGACGAGTACTGGGTTTGCTTTC GATATTGATTCTGTGTTTTCAAGTACTAAAAGTTCGAGTGTGCAATCGTCTTTTGTTGATGATATATTTGGTGGGTTAAATGGGTCTAGTTCATCAGTTA ATAACAATAACAATAACAACAACAACGAGGATGGTGATATTTTTGGGGCGTTTACTTCTTCAAAGGGCGCCAAGCAAAGTGCACCAGTCAAAGATTTGTT GGGGGGTTTCGGTACAAAATTGAAGCCTCCGAGCCGTAATGGATCTGTTGGTTTTGATGATTTGATACCTGGGTTTGGTCCCAGCAACTCATCAAGGAAA GAAAAAAATATGCATACAATTACAACAGCATTCACTTCATCAGAGGACCCTTTTGCAGTACTTGAACAAACTTCAACCACAACAAAATCGTTTACAGACC CACTGGAGGAATTTGGTAAGTTTAATCATTCTGGAAGAACAGAACCTGCTGTTTCATCAAATTGTTCCCCACCATTGAGACCCCCTCCAAAACCAGGACA AGTTTTGAAGACAGGAAAAGTTTTGGATGTTTCTGCCATAGATGAACTGGAAGACTTTGCTATGGGTAGGATGCAAAACAATGCTCGTAGTGTCTCTAAT GGTCACCATGCTGGGGAAGTAAAGCAGAGCGCGGATGATCTAGAATCATTTTTTGGCAGGGTTTCTCAGTCTAGCAGTGTACCAAAGTTAAGGTCTGGAG TTCTGGACCCTCTATTTGATGCAAAGATAAATGGAAAGGGAAAGCCCGAATTCCCTTTTAAAAAGGCTTCAAGCCCCTCACCTGGCATAAGGAAGACTTC TTCTACAACAAATGCACTTGGTGACCTTTCTTTGATTTTTGGAGATGCCACATTATCTGGAGAATTTGAGGAAGTTGAAGGGGAAAGTGAAGAAAGAAGA AGAGCCAGATGGGATCGTCACCAGAGGACCAGGGATCGTATGGAACAAGCAGTTGCTGATATGAACCAGCGTGACCTTCAAACTTTGCATGAGCAAGAGG AGAGGCGTAGGATAGCTGACAAAATGGATGTTCAGATAAAGCACTGGGCTGCAGGGAAGGAAGGCAATTTGCGTGCACTGCTATCATCATTGCAACATGT GCTTTGGCCTGAGTGTGATTGGAAACCAGTTTCACTGACAGATTTGATCACCTCTACCTCAGTGAAAAAAGTCTATAGAAAGGCAACATTATGCGTCCAT CCTGACAAGGTTCAACAGAAAGGTGCCACTATTCAACAAAAATATACTTCTGAGAAGGTTTTTGATATCCTCAAGGAAGCTTGGAACAAGTTCAGTAAGG AGGAGCTCTCTTGA
AA sequence Show only first row Show all	>Potri.005G181700.2 pacid=42804061 polypeptide=Potri.005G181700.2.p locus=Potri.005G181700 ID=Potri.005G181700.2.v4.1 annot-version=v4.1 MDEFGVLTERFGLKPQGKSAPMSASRGTNNAQTRDFPSSNPKSNSYSSKSTYNSNSYNGSFMDDRETLFSNSKSQNFGDDFDIFGGFQKNSKQTSTGFAF DIDSVFSSTKSSSVQSSFVDDIFGGLNGSSSSVNNNNNNNNNEDGDIFGAFTSSKGAKQSAPVKDLLGGFGTKLKPPSRNGSVGFDDLIPGFGPSNSSRK EKNMHTITTAFTSSEDPFAVLEQTSTTTKSFTDPLEEFGKFNHSGRTEPAVSSNCSPPLRPPPKPGQVLKTGKVLDVSAIDELEDFAMGRMQNNARSVSN GHHAGEVKQSADDLESFFGRVSQSSSVPKLRSGVLDPLFDAKINGKGKPEFPFKKASSPSPGIRKTSSTTNALGDLSLIFGDATLSGEFEEVEGESEERR RARWDRHQRTRDRMEQAVADMNQRDLQTLHEQEERRRIADKMDVQIKHWAAGKEGNLRALLSSLQHVLWPECDWKPVSLTDLITSTSVKKVYRKATLCVH PDKVQQKGATIQQKYTSEKVFDILKEAWNKFSKEELS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	0	1
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Potri.008G111600 [exp]	3.16	0.7169
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.002G079200 [exp]	3.31	0.8418
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.010G223300 [exp]	4.47	0.7632
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	5.74	0.6773	Pt-GLT1.3
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	7.74	0.7370
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	9.21	0.7477
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	9.59	0.7494
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	15.71	0.7107
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.007G071500 [exp]	15.87	0.7116
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	19.28	0.6795

Compare expression of checked genes

Potri.005G181700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.