Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 604 / 0 Protein kinase superfamily protein (.1) AT2G48010 370 / 2e-120 RKF3 receptor-like kinase in in flowers 3 (.1) AT4G01330 258 / 5e-79 Protein kinase superfamily protein (.1.2) AT1G01540 256 / 2e-78 Protein kinase superfamily protein (.1.2) AT1G29720 262 / 3e-76 Leucine-rich repeat transmembrane protein kinase (.1) AT4G34500 249 / 3e-76 Protein kinase superfamily protein (.1) AT3G24540 251 / 6e-76 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G24550 252 / 6e-75 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 246 / 3e-74 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G09440 245 / 3e-74 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G132800 [exp] 651 / 0 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 649 / 0 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 629 / 0 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 353 / 8e-113 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 347 / 1e-110 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.017G132250 [exp] 332 / 9e-110 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.005G040200 [exp] 331 / 3e-105 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 324 / 1e-103 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.011G072841 [exp] 268 / 7e-84 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029711 [exp] 756 / 0 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 615 / 0 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10001295 [exp] 561 / 0 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 560 / 0 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10012701 [exp] 551 / 0 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10028551 [exp] 533 / 0 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10018861 [exp] 521 / 3e-179 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10028552 [exp] 514 / 2e-176 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10029714 [exp] 486 / 3e-166 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 400 / 4e-135 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G181800.1 pacid=42802384 polypeptide=Potri.005G181802.1.p locus=Potri.005G181800 ID=Potri.005G181800.1.v4.1 annot-version=v4.1 ATGGGAAACAACCTGCTCTTCTCTTCCTCTCTCTGCTCCTGCTTCTTCTTCTTCTTCTTCACCATTTTATCCATTCATCCAGTTTCAGCCGCTTCTTCAT GTCCCGTAGATCTCAGCTACGTCCAAACTGTGCCGTGGGACACATCGCTGTGTCGCCAACCTGATGGATTAGAGCATTGCTGCCAGACTCTTCTGAGTCT CTTTGGCATGGGACTTGCCCAACAATTAAGAGAGACCTCCATGTTTCAATTTCCTAATTTAAATGCTTCATCTGCTTGTTTATCTGATTTTCAAGCCAAA CTTGCCACCTTGTCGATAGACCCATCATTAGTCCCTTCTTGCTTCAAGAACTCGAGTCAATTTGTTAGTAGCACTTCTAGTTGTATTGGAATCGTTACTA CACAGGATTGGATTGAGAAGGTTGGTCCAATGACCCCATTAAACACGGCTTGCAGAGGCGATTTTTCAGAACTAACGAGGTGCAGCTCATGTCTTGATGC AGGGCAGAAGGTAAATTCTCAGTTAACGAGTCTAGACCCAAATGCCACCGCCACCTCCAAGTGCTTCTACTATACTTGTTTATATGCTGCTGGGATTGTG AGCGAGCTTGGTCCCCTGGATGCCAAAACAGCTGCCTGCACCCTAGCCTTGCCATTGGCTAACTCAGGTACTAAAAAGCCAGCCAAGAGCAAAGATAAGT TACTCAAGCTCGTATTTGGGCTATTGGGCTCTCTGATTGGTGTCTTGCTTGCTTTTGGACTGATCACCATGTATAGAAAATGGGACAGGAAGAGGAAGGT CAGTGCTTCACATGAAAGATTTGTCAGCAGTTTCAAGGCCAGCATGCTGCCTAACTCTGGTGCAAAATGGTTTCATTTATCAGAACTTGAACGAGCCACA CAAGGGTTCTCTCAAAGGAATTTCATCGGCCAAGGAGCTTATGGGGTTGTGTACAAAGGAACTCTAGCAGATGGCACCTTGGTTGCAGTGAAACAAATGC ATGATTTGGATTCACAGGGTGATGAAGACTTCTCCAATGAGGTTGAGATCATAAGCAAAATAAGGCACAGGAATCTTCTCTCTCTGCGAGGATGCTGTGT TACAAGTGATAACTCGAAAGGTAAAAGGAGATACATTGTTTATGATTTCATGTCTAATGGTAGCCTCGGTGACCATTTATCCAATGACCATAGCAGGAAG CAATTAACTTGGCCTCAGCGTAAGAATATCATTCTGGACGTGGCCAAAGGACTTGCTTACTTGCATTATGGTATCAAACCTGCCATTTATCACCGTGACA TTAAGGCCACTAACATACTCTTAGACTTGGAAATGAAAGCAAAAGTTGCCGATTTTGGGTTAGCTAAGCAAAGTTTAGATGGCCAGTCTCATCTCACCAC AAGAGTAGCCGGCACACACGGTTACTTGGCACCTGAATATGCTCTATATGGGCAACTGACAGAGAAAAGTGATGTTTACAGTTTTGGAATTGTGATTCTT GAAATCATGAGCGGCAGGAAGGTGATTGATACATCAAACTCATCATTCCTTTTGATTACAGATTGGGCATGGACACTAGCGAAATCAGGGAAGTTGCAGG AAATTCTCGATGAGTCGATAAGGGATCAGGGACCAAAAGGGGTAATGGAGAGATTTGTTCTTGTTGGAATTCTCTGTGCTCACGTGATGGTAGCTTTCAG ACCTACCATTGCTGATGCTCTAAGAATGTTAGAGGGCGACATTGACATCCCCAGATTACCAGAAAGGCCATTGCCACTCGGTCACGAGTCATTCAGACCT TTATGGAAGGAAAGTTCGTATACAACCGAGAGATCAAGAACCAGCAGCTCAAGCAGGAGATTAATGTAG
AA sequence Show only first row Show all	>Potri.005G181800.1 pacid=42802384 polypeptide=Potri.005G181802.1.p locus=Potri.005G181800 ID=Potri.005G181800.1.v4.1 annot-version=v4.1 MGNNLLFSSSLCSCFFFFFFTILSIHPVSAASSCPVDLSYVQTVPWDTSLCRQPDGLEHCCQTLLSLFGMGLAQQLRETSMFQFPNLNASSACLSDFQAK LATLSIDPSLVPSCFKNSSQFVSSTSSCIGIVTTQDWIEKVGPMTPLNTACRGDFSELTRCSSCLDAGQKVNSQLTSLDPNATATSKCFYYTCLYAAGIV SELGPLDAKTAACTLALPLANSGTKKPAKSKDKLLKLVFGLLGSLIGVLLAFGLITMYRKWDRKRKVSASHERFVSSFKASMLPNSGAKWFHLSELERAT QGFSQRNFIGQGAYGVVYKGTLADGTLVAVKQMHDLDSQGDEDFSNEVEIISKIRHRNLLSLRGCCVTSDNSKGKRRYIVYDFMSNGSLGDHLSNDHSRK QLTWPQRKNIILDVAKGLAYLHYGIKPAIYHRDIKATNILLDLEMKAKVADFGLAKQSLDGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGIVIL EIMSGRKVIDTSNSSFLLITDWAWTLAKSGKLQEILDESIRDQGPKGVMERFVLVGILCAHVMVAFRPTIADALRMLEGDIDIPRLPERPLPLGHESFRP LWKESSYTTERSRTSSSSRRLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046700 [exp]	2.00	0.9934
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	2.44	0.9907
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.008G166700 [exp]	2.64	0.9875
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G128900 [exp]	3.16	0.9884
					Potri.003G071050 [exp]	4.00	0.9867
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.005G095250 [exp]	4.89	0.9878
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Potri.011G131001 [exp]	5.47	0.9818
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.002G150600 [exp]	10.48	0.9707
AT5G37490			ARM repeat superfamily protein...		Potri.015G031000 [exp]	11.48	0.9751
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.006G149600 [exp]	11.66	0.9889	ACS6,ACS3.1

Compare expression of checked genes

Potri.005G181800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.