Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77360 721 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 390 / 2e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 260 / 6e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 252 / 1e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 248 / 3e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 247 / 3e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 247 / 5e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 240 / 3e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 227 / 5e-69 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 231 / 1e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114700 [exp] 390 / 7e-131 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 276 / 3e-87 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 260 / 1e-79 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 253 / 4e-78 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 245 / 5e-74 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 234 / 2e-71 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 223 / 2e-66 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 221 / 8e-66 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 218 / 4e-64 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001588 [exp] 704 / 0 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 351 / 1e-115 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003703 [exp] 337 / 7e-115 AT1G77360 317 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 278 / 5e-88 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 275 / 2e-86 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 248 / 4e-75 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 240 / 5e-72 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 240 / 6e-72 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 227 / 2e-67 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034419 [exp] 225 / 6e-67 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G181900.1 pacid=42804747 polypeptide=Potri.005G181900.1.p locus=Potri.005G181900 ID=Potri.005G181900.1.v4.1 annot-version=v4.1 ATGAGCAGAATTTATAATAACTCGAATAAATTATATTCGGGATTTAATAAAATGCTAAAGAGAAGATACATGTCAAGTGAAACAAGTGATACAACGAAAA CAATATGTAAAATTATGATGTCTTCGTCGGTAGTCACACTTGATACTGCTCTTGATCAAAGTGGGGTTAGGGTTTCAGAACAGATAGTGGAGGATGTCCT TAAGAAGTTTGAAAATGCTGGGATGGTGGCTTATCGATTCTTCGAATGGGCCGAGAAACAACGGCATTATAACCATAGTGTTAAGGCTTTCCATACTGTG ATTGATTCTCTAGCTAAGATAAGGCAGTATCAGCTAATGTGGGATGTTGTGAAGGTTATGAAGAGTAAGAGAATGGTAAATGTTGAGACCTTTTGTATTA TTATGAGAAAGTATGCTAGAGCTCAGAAGGTGGAGGAGGCTGTTTACACGTTTAATATCATGGATAAGTATGATGTGCCTCCAAATTTAGCGGCGTTTAA TGGGTTGCTTAGTGCTTTATGTAAGTCTAAGAATGTGAGGAAGGCTCAAGAGATCTTTGACAGTATCAAGGACCGGTTTGTTCCGGACTCAAAAACTTAT AGTATATTGCTTGAAGGATGGGGAAAGGATCCAAATCTGCCTAAAGCAAGGGAGATTTTCAGAGAAATGGTCAGCAATGGTTGTAGACCTGATATCGTGA CTTATGGTATCATGGTAGATGTGCTTTGCAAGGCTGGGAGGGTTGATGAAGCCCTTGGAATTGTCAATGAAATGGACTCTACAGTTTGCAAGCCAACTCC TTTCATTTATAGTGTTCTGGTTCATACATACGGAATAGAGAATCGGATTGAGGATGCTGTCAGCACCTTCCTAGAGATGGAAAATAATGGAATCGAGCCT GATGTTGCAGTTTATAATGCTTTGATCGGTGCTTTTTGTAAAGCAAACAGGCTTAAAAACGTCTACAGAGTCTTAAATGAGATGGATTGCAAGGGTGTGA CGCCCAATTCAAGGACCTTCAACATCATTCTGAGCAGTTTGATTGGCCGTGGAGAGACTGATGAGGCTTATAGGGTATTTCTCAGGATGATCAAGGTATG CGAGCCAGATGCAGATACATATACTATGATGATAAAAATGTTTTGTGAGAGGGATGAGCTAAAAAAGGCACTTAAAGTGTGGAAGTACATGAAGTTGAAG CGGTTTATGCCAAGCATGCACACTTTTCAAGTTCTTATAAATGGACTCTGCGAGAAGGGTGATGTCACTCAGGCTTGTGTCTTATTGGAAGAGATGATAG AAAAGGGAATTAGGCCTTCGGGTGTGACATTTGGGAGGTTAAGACAATTGCTTATAAAAGAAGGAAGAGAAGATGTACTAAAATTTCTTCAGAAGAAAAT AAATGTCCTCGTCAATGACCCTTTATGGGAGTGGTGA
AA sequence Show only first row Show all	>Potri.005G181900.1 pacid=42804747 polypeptide=Potri.005G181900.1.p locus=Potri.005G181900 ID=Potri.005G181900.1.v4.1 annot-version=v4.1 MSRIYNNSNKLYSGFNKMLKRRYMSSETSDTTKTICKIMMSSSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTV IDSLAKIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTY SILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEP DVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKVCEPDADTYTMMIKMFCERDELKKALKVWKYMKLK RFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQKKINVLVNDPLWEW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.005G181900 [exp]	0	1
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.006G256300 [exp]	11.40	0.8057
AT5G64816			unknown protein		Potri.005G156400 [exp]	19.49	0.7421
AT5G16040			Regulator of chromosome conden...		Potri.017G113200 [exp]	27.20	0.6792
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	37.30	0.7170
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	40.32	0.7262
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	41.56	0.7055
AT3G47510			unknown protein		Potri.015G062300 [exp]	42.21	0.7229
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Potri.017G107400 [exp]	43.63	0.7235
					Potri.018G110375 [exp]	45.35	0.7207
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	45.95	0.7112

Compare expression of checked genes

Potri.005G181900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.