Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2) AT1G02920 69 / 9e-14 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT1G02930 67 / 3e-13 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT2G30870 64 / 4e-12 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G62760 64 / 4e-12 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G02940 64 / 7e-12 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT4G02520 61 / 7e-11 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G30860 58 / 5e-10 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G02930 57 / 1e-09 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT1G49860 55 / 1e-08 ATGSTF14 glutathione S-transferase (class phi) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207672 [exp] 66 / 1e-12 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G015200 [exp] 62 / 3e-11 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.014G132200 [exp] 61 / 6e-11 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207093 [exp] 56 / 5e-09 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G015100 [exp] 56 / 5e-09 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207479 [exp] 55 / 7e-09 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 51 / 1e-07 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042756 [exp] 447 / 7e-161 AT1G77290 398 / 2e-141 Glutathione S-transferase family protein (.1.2) Lus10029723 [exp] 443 / 3e-159 AT1G77290 392 / 3e-139 Glutathione S-transferase family protein (.1.2) Lus10020735 [exp] 79 / 2e-17 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 78 / 5e-17 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 77 / 9e-17 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 72 / 5e-15 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10004151 [exp] 62 / 3e-11 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 59 / 3e-10 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 57 / 2e-09 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10023511 [exp] 53 / 5e-08 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G182000.2 pacid=42805251 polypeptide=Potri.005G182000.2.p locus=Potri.005G182000 ID=Potri.005G182000.2.v4.1 annot-version=v4.1 ATGCAGCTATATCACCATCCATACTCCCTGGATAGCCAGAAGGTCAGACTAGCTTTGGAAGAGAAGGGCATTGATTACACATCAAACCATGTCAATCCTA TAACGGGCAAGAATATGGACGCCTCATTCTTCGGGATAAATCAAAGCGCAAAACTCCCAGTTTTCCAGAACGGCTCTCACATCATTTTCGACACTATTGA AATAATCCAGTATATCGAAAGAATTGTAGTCGTCTCTTTGGGTGGTGGTGACTCATCCTTTAGCAGCAGAGAGGTTGTTGAATGGATGTGCAAGATACAG GAGTGGAACCCCAAGTACTTCACACTTTCACACGTCCCTGAGAAGTACCGCATCTCTGTTTCCAAATTCATTAGACAAGTGATCATAGCACGGATGGCTG AATCTCCTGAACTAGCCAGTGCTTACCACCGTAAGCTAAAAGCTGCATATGAAACGGAGGACAGGCTGGGAAACCCTGAAGTTTTGAAACGGAGCAAAGA GCATCTTGTTAGACTTCTTGATGAAGTTGAGACCAAGCTAAAAGAAACAGCATATTTAGCAGGGGAGGAATTCTCAATGGCAGATGTAATGCTGATCCCA GTGCTGGCTCGCTTAGTCCTCTTGAAGCTGGAAGATGAGTACATAAGTAGCAGGCCAAATATTGCTGCGTACTGGGTTTTGATGCAGCAAAGGCCTAGTT ATAAAAAGGTGATTGGAAAGTATTTCAATGGCTGGAGAAGATACAAAACACTAGTGAAAACCTGGTGCTTTGTTCGTTTCAGAAGTTTGTTGAGGAGGTA TTAG
AA sequence Show only first row Show all	>Potri.005G182000.2 pacid=42805251 polypeptide=Potri.005G182000.2.p locus=Potri.005G182000 ID=Potri.005G182000.2.v4.1 annot-version=v4.1 MQLYHHPYSLDSQKVRLALEEKGIDYTSNHVNPITGKNMDASFFGINQSAKLPVFQNGSHIIFDTIEIIQYIERIVVVSLGGGDSSFSSREVVEWMCKIQ EWNPKYFTLSHVPEKYRISVSKFIRQVIIARMAESPELASAYHRKLKAAYETEDRLGNPEVLKRSKEHLVRLLDEVETKLKETAYLAGEEFSMADVMLIP VLARLVLLKLEDEYISSRPNIAAYWVLMQQRPSYKKVIGKYFNGWRRYKTLVKTWCFVRFRSLLRRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77290			Glutathione S-transferase fami...		Potri.005G182000 [exp]	0	1
					Potri.011G062950 [exp]	1.00	0.9220
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232600 [exp]	1.73	0.8956
AT3G19330			Protein of unknown function (D...		Potri.010G240200 [exp]	4.47	0.8859
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	4.47	0.8886
AT4G12640			RNA recognition motif (RRM)-co...		Potri.014G171900 [exp]	6.92	0.8760
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	8.36	0.8547
AT2G42450			alpha/beta-Hydrolases superfam...		Potri.002G041000 [exp]	8.71	0.8228
AT1G32260			unknown protein		Potri.003G095600 [exp]	13.85	0.8599
					Potri.011G073666 [exp]	14.00	0.8688
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	15.49	0.8532	Pt-ATTIM23.1

Compare expression of checked genes

Potri.005G182000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.