Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77300 806 / 0 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT1G76710 196 / 2e-53 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT3G59960 140 / 8e-36 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G30860 141 / 7e-35 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT2G44150 135 / 9e-34 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT1G05830 92 / 3e-18 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 90 / 2e-17 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G23740 89 / 3e-17 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT2G31650 84 / 1e-15 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT3G04380 79 / 2e-14 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079100 [exp] 3318 / 0 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G195400 [exp] 200 / 2e-54 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.007G147200 [exp] 167 / 7e-45 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 166 / 3e-44 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.018G102100 [exp] 142 / 7e-35 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.007G033000 [exp] 102 / 4e-21 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.002G232800 [exp] 97 / 1e-19 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 97 / 1e-19 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 97 / 1e-19 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028662 [exp] 995 / 0 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10000967 [exp] 966 / 0 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10016600 [exp] 201 / 5e-55 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10039118 [exp] 163 / 4e-43 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 152 / 1e-38 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 133 / 2e-31 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10016788 [exp] 102 / 2e-21 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 102 / 3e-21 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10025172 [exp] 92 / 4e-18 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10026725 [exp] 92 / 7e-18 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.005G182100.1 pacid=42802412 polypeptide=Potri.005G182100.1.p locus=Potri.005G182100 ID=Potri.005G182100.1.v4.1 annot-version=v4.1 ATGGGGGCGTGTGAGAATTCGTTTGAGCCACACGAGCCCTTGACTCTTGCTGCCACCGAGCAGCATTCGTGCTTGGAATTTATCAAGGATTCTGAGCAGC TGCCAGTCTTGGAGACTGCTCACAGTCTAATTGATACTAATGTGGAACCCTCTAGTGCGACTGATGGGTTTGTGGACTTGTCTCAGAAAGATAATGTTGT TTGTGCCAGCCACAGTGATGTTAAGGCTGTGTCAGCTGATATGGGAATTGGGTTGACGGGTGAGGGGGAGAGTGTGGTTGGTTTGACAGCAGGGAAATTA TTGGAGGATGAATCTGGGGTTATTGGGGGTTGTTTGGATGAGAGGCAAAGTGGGATAGATGATTGTAATGGGGAAACGGATAGATCCCGGGAAGAAAAAG CAGGGCTTGGAGTCAAGAATGGTGGACCACTAGACTGTGAAAGGTCTTTGGAATTGCTGGAGAGAAATTGTGATCAACAGGATGGCCGAGTGGATGATAA GAAAACTGGTGTTCAAGGTGTTACAGAAGAGGAAAGTGATGGTTTAGTTACAGTAGAGGCTGATACTTCCGATGAAGTAGTGCCTTCAACCTCATGTGAA ACATCTGTAGAATCGATACTTGGGAATGATATGACTAGAAATTGTGATCAACAAGATGACCAGAATGATCATGAGAGTGGCAGTGTTCAAGGGGTTATGG AAGAGAAAAATGATGGTTTAGCTGCAATAAAGATTGTTAATTCTGATGAAATAGTTCTTTCACTGGGCAGTGAGATGCCAACAGAATTAATGCAAGCAAA GGATTGGAGCAGAAATGGTGATCAACAAGATGACCAGAGGGATGATAAGAATGTCAGTGTTCAAGGGGTCATGGAACAACATAGTAGTGGCTTAGCTCCA ATAGAGTTTGATGATATACATCATGAAATAGTGCTTTCATCGGGTCAAGGAATGCCTGCAGAACTACTACCAGAAAAAGGTTTGCCTAGTGATGGCAATG AACAGTACAAGCATGATTGTGGTACCTCTCAAGAAGCAGTTATGGAAGAGAAAATTGACAATTTAACTGGGCTAGAGAATAGAGACCTTCAAGCTGTGAT GGAACAGAAAAGTGATGGTTTAGTGGCAACAAAGACTGCTGATACTTGTGAAAACATATTGCCTTCATTGGGATATGAAATGCCCGCTGAGCGTTTGCCT AGAAATGGTGTTGAGAAGGACAAGCAAGACAGGAGCACCTCTATGGTGCTGACCATGGAAGAGAGAAACAATGATTTAGCTGGGACAGAGAGTATTAGTA TGGAAGGGTTCATGGAAGAAAAAAGTGATGGTTTAGCTGCAATAGAGACTGCTACTCATAATGAAATAGGACCTTTGTCAGGCTGTGAAATCCCTGCTGG ATTAATTTCAGTGAATGGTTATGGTGTTGAACTGGACAAGCAGTATGATGGTACGTCTCCTACTGTGGTTCCAAAAGAAAGAAGTGTTCTTTTAACTAGG TTAGAGACTGATAATCAAGACCAAATATTGCCTTCACTTGACCATGGAATGCATTTGGAATCAACAACTGTTACATGTCCACCAAGCAAGTGTCTTCAGC CGGATGACCAGAAGGGTGATCAGATCATTAGCTGTCTCATTGCAGGAGGGGTTATGGAGGAAACAAGTGATGCTTTAGATGCGACAGATACTACTACTTC CAATTGGTTGTTGTCATCACAGGGCCTCGAGAGGACCTTGAAATTAATGCCCATGACTGGTTTGCCAGAAGAAAGTGTTTATCATGATGAGCAGAAGCTG ATACCAAGTGAACTAGATTCTAAGGTTGTCAATGGTCTAGCTATAGAGAGGGTTCCAGAGCAGGAAAGCGATGCCTCAGCCAGGATAGGAGCTGATATAT ATGCCCAGGTATCACCACATGGTGCTATTGACTCTAACAGTGCAGGTGACTGTTCTGGAGAGACGGTCAATGAAGCAAAGAATCATGTCAGCATTGATAG TGTTTCTGAAACCAAGTGTCATGACATTGCATCACCATCTTCACAAAGGAGCAATGGAGTACGCAAATCAAGCCGGAAGGCCCAGACAAAAAGGGCTGCA AGGAAATCTAGAAATACAACCAAAGTCCCAAACCTTCATCTAGGTATTGAGACTGTCTTCAAAAGTGTGACAAGGAAGCGAAGCTGTTTCTCCAAACCAG CTCGGTCTTCTGCTTGGGGATTGTTGGGGAATATTACACATGCATTTACAATGATTGATGGTCCCAGACTTGATGAAATTGAGAATAATGGATCACAAAA AGCAAGGGGTGGCAGAGGAAGCAGAAAGCGGAATAATCGTGCTGGTGGAAGGTCACAAAGGTCTAGCAAGAAAGGCTGTGCTTCAGCTAGTTGCATTCGT TTGAAAGTTAAAGTGGGAAAAGAAGCTTGTCAAACTGAAGCTAATCCGAAGATTATGATCCCAGAGGTAATTGATACAAAAGCATCTGCTGAACTTGTAA GCAATTATGGGGTTGAGTCATATCAGGAAACCAGTTTTGAAATGTCAAAGTTAGTCCATTATGCTGAAGATAATGTGGCTGAAGAGGGAGCTGGAAAACA GCTTCAGTCTTTTGATATTAAGTTGAAGGCAGAGTTACATTGCGATCCTTATGGCATGGATGTAAATCTTGCAAACAAAGATATGGAGGGCATGGTGATT TTTGAAAAGTCACCTGGAGATACTGTGGAAGATTATATCGGGGTTCCTCTCCATACAGAGGTTGAAGCACTGGGAGCAACAACTGAGAAGAGGTATACAG ATCCTGGAACTTCACCAGATTCAGAAGTTATCAATTTAGTTGCCGAGGGCCAAGTCGATGCACGATGTCCAGAAGATTTTCATGATGCTGTTCTGTCTTC TTCTAAGGCTTTTGCTACAGATCAAGGGGGTAATGGTAAAAGGAGGGGAAAAAAGAAAGAAAGGCTCCCTCAAGCCGCTAACTGTTCACCTGCTGCGGCA AGCTTAAACAAAGTTAAATTGGCAAAGAAACGTGGGGGCAGGCAGAGAAAGGCTGATGGCCTTTCCTCTACTGAGATTCTTACTTCATCCAGCAGTGTGA ATGGTTTGATCAACACACCAAGCAGTAAAGAATGTTCCGCAGAACAGGTACCTTTGTCAAGAGAGACTGAACTTGAAGTCTCTGGAGAGGTTTTGACAGA AGAAATCAGTATGGAAACTAAAATATGTGTTGGTGGACTGGATGCTGAGCTTAGGTCATCAGAATCACAGATTTCAAAGAATCCTCTTCCTTCAACTAAA TCCAGGGGAAATGGAGTGAACAAGGGAAGGTCCAAAGTCTCCGACTCTGCAAAAAGCCGGAGGGCAAATGGTTGCAAGGATAGAGGAAACGATAGGAAGT CAGTTAAAAAGAACAAAGCCAAGGGGAAGAGTGTTTGTGATCATGTTTTTTACAAAGTTGATGATGATCCAGAAATAGATGAAAATGGAAAAATTGATGC TGTTGAGGATACTGCTGCAGAAGAGGTAGCTGATTTGGACACGCCGTCAAGTGGTGTAATGGAGCAAAATTTATCCCCAGATAATGCTTGGGTTCGCTGT GATGATTGTCTTAAATGGCGGCGTATTCCAGTTCGACTTGTAGAATCTATTAGTCAAACACATTGCCAATGGATCTGCAAGGACAACATGAATAAAGCCT TTGCTGATTGCTCCTTCCCCCAAGAGAAGTCAAATGCAGAAATAAATGCAGAGTTGGGCATATCAGATGTTGATGAGGATGGTTGCGATGCCCCTTCAAA TTATATGGAATTGGAATGTAGACAGACATCAGTTTCCAAGGAGTATGAATTTACACGCATCACTACCAATCAGTTTCTGCACCGTAGCCGTAAAACTCAA ACTATTGATGAGATCATGGTTTGTTACTGCAAAGCACCTGTGGCCGGTCGGTTAGGTTGTGGAGATGAATGCTTGAATCGAATGCTTAATATTGAGTGTG TTCAAGGAACCTGTCCATGTGGGGACCATTGCTCAAATCAACAGTTCCAAAAGCGCAATTATGCCAAAATGACATGGGAGCGATGTGGGAAGAAAGGTTT TGGACTGCGATTGGATGAGGATATATCCAGAGGGCAATTCCTTATTGAATACGTTGGAGAGGTGCTTGATGTGCATGCTTATGAAGCAAGGCAAAAAGAT TATGCTTCCAAGGGTCACAAACATTTCTACTTCATGACATTGGATGGCAGTGAGGTAATTGACGCATGTGCGAAGGGAAATTTGGGGCGTTTTATTAATC ATAGTTGTGATCCTAATTGTCGTACTGAAAAGTGGGTGGTCAATGGAGAAATCTGTATTGGATTATTTGCGTTGAGGGACATTAAAATGGGCGAAGAGGT GACATTTGACTATAACTATGTAAGAGTTGTTGGGGCTGCTGCTAAAAGATGCTATTGTGGTTCGCCTCAATGTCGAGGCTATATTGGTGGTGATCCAACT AGCACTGAAGTAGTTGATCAAGTTGATTCGGATGAAGAATTTCCTGAACCTGTAATGCTTGAAGATGGAAGAGTGGGAGGTGGCTTAAAAAATAAAATAT CCAAAACCAATTTCTTTGGTTTGTCAAAAGACAGGGAAATAGAATTCAAAACAGCTGTTGGGAACTTGGAGGTTGCAACTGAAATTAAGGACTTGACAAG CCAATTAACCCCTGCCATGTCTCTATCACCCAGTGCATCAGAAATGAATGGTTTACCTGGAGATTTTTCTTCTTCCAGTCAACAAGTAGAAACCTCCCCA AAGGCTGAAGATGTAATGAGCCAACCCACACCTGCTGTTCAGCAAGAGATTTCCATGGAAGAGACTATGAACAAATCCTTGTATTCCAGTGAAAAGTTGA GGACCTCTCCAACTTCAACTCCCACCAAAATATTGCCTGATGATGTTATGATTAACAGGAAGTCTAAGTCTGCCGCAGCTGAAAACAAGAGGGTTTTTGT GAAATCTCGTTTTATTATTAAAACTCCACACCAATCTAGTTTAATCAAGAAAGGAAAGTCTGCTGGTAATCTCATAAACATAAACAAGGTTCAGACAATA GCCAGCAAACCTCAGTTTCCACTTATCAAACCCAAAAAATTAATAGAGAGTACCTCGAATGGCCATTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGT TGGATTCCGAGGGTGGCATAAGCAAACGGAAAGATGCTCCTAAAGGCTACCTGAAACTTCTCCTCCTTACTGCAGCTTCTGGTGCTATTAGAAGTGGTGA AGCAATTCAGAGTAATCGGGAGCTTTCAATGATACTCGATGCACTCTTGAAAACTAGATCACGAGTGGTACTGATGGATATAATTAACAAAAATGGTTTA AGAATGCTTCACAACATAATGAAGCAGTACAGAAGGGACTTTAAAAAGATTCCAATTCTCAGGAAGCTTTTAAAGGTTTTAGAGCATTTGGCAGTCAGGG AGATACTTACATTGGAACATATAAGTGGAGGTCCTCCTTGTCCTGGAATGGAGAGCTTTACAGAATCCATGTTGTCCCTGACAGAGCATGATGACAAACA GGTTCATCAAATTGCACGAAGTTTTCGAGATAGATGGATCCCTAGACATATCAGAAAGCATAGCTATATGGATAGGGATGATGGGAGGATGGAGATTCAC AGAGGTTCAAACTGCAATAGGGTTTCAGCTTCTCATAATCATTGGCATGATCAGGGTGTAAGACACACAGAAGCACTTAATGGTGTTGTGGAATCAAACC TTGCAATGACTTCAGGGGGCACTGCTGTCCATGAGGACAACTCTGTGAATCGTGTAGGCAGCGGTGCAAGAACTCGCAAGCGTAAAACTAGATGGGATCA ACCCGCTGTGGGAAATATAGCTTCCAGCTCTCTTCAGCATATTAAACAGAATGTTAATTCTGGGTTGGTACAACAATATGAATCTAACCCATTACTTGAG TTAAGTAAAGAAGTGCCAGTTCATGTGGACAAGGCAGGTAGAGAGTACAGTTATTGCCCTCATTGTGTTCGCAATTATCGCTGGCAAGATGAATCTAGTA GTGCTGATGACAGAAAGCAGAATATTCATGAGGATGTTCCACCTGGATTCTCATCTCCGATTAATGCTGCTCTTGCATCCAATGCTTCTTCCACTGTTGC TGACCCCCCTCAACAAAATGTTTTCCATTTGAAGTTTCCTGTTGGTATGGTTGTCGGTCATCCACAGAAGAAATTCAATTCCCGCTTTCCTGTCTCGTAT GGAATTCCGTTGTCTGTTATGCAGCAATTAGGATCACCCCTGGCTGAAACTGTAGAGAGTTGGGTTATTGCTCCTGGCATGCCTTTCCATCCTTTTCCAC CATTACCACCACTTCCCTCCTGTAAGAAAGGGACTCAACCTTCTTGTGCTGTGAGCTCTATGGAGGTTGATGGTGAAGCAGATCGAGGGCAACAGGACAG CCATGATCCTACCACTTGTCCAAATGAAAGTAGTCCAAGCATGAGTGGTGCTAACCAACCAGATGTGAATAGCCCTTGTCCAAATGACCATCAAACATTT AAACGTGCGAGGGGATTTTCATATGATTTGGGAAGGAGGTACTTTAAGCAACAGAAGTGGAATAAAGTGTCTCCTCCATGGGTTCGGAATAGGAATGGGT GGGGATGTGTAGGAGACAACTCAAGAGGTGGAATGTGCAGCACTGACATGGGAAGTCTAACAAATGAACAGAGGAACTCATAG
AA sequence Show only first row Show all	>Potri.005G182100.1 pacid=42802412 polypeptide=Potri.005G182100.1.p locus=Potri.005G182100 ID=Potri.005G182100.1.v4.1 annot-version=v4.1 MGACENSFEPHEPLTLAATEQHSCLEFIKDSEQLPVLETAHSLIDTNVEPSSATDGFVDLSQKDNVVCASHSDVKAVSADMGIGLTGEGESVVGLTAGKL LEDESGVIGGCLDERQSGIDDCNGETDRSREEKAGLGVKNGGPLDCERSLELLERNCDQQDGRVDDKKTGVQGVTEEESDGLVTVEADTSDEVVPSTSCE TSVESILGNDMTRNCDQQDDQNDHESGSVQGVMEEKNDGLAAIKIVNSDEIVLSLGSEMPTELMQAKDWSRNGDQQDDQRDDKNVSVQGVMEQHSSGLAP IEFDDIHHEIVLSSGQGMPAELLPEKGLPSDGNEQYKHDCGTSQEAVMEEKIDNLTGLENRDLQAVMEQKSDGLVATKTADTCENILPSLGYEMPAERLP RNGVEKDKQDRSTSMVLTMEERNNDLAGTESISMEGFMEEKSDGLAAIETATHNEIGPLSGCEIPAGLISVNGYGVELDKQYDGTSPTVVPKERSVLLTR LETDNQDQILPSLDHGMHLESTTVTCPPSKCLQPDDQKGDQIISCLIAGGVMEETSDALDATDTTTSNWLLSSQGLERTLKLMPMTGLPEESVYHDEQKL IPSELDSKVVNGLAIERVPEQESDASARIGADIYAQVSPHGAIDSNSAGDCSGETVNEAKNHVSIDSVSETKCHDIASPSSQRSNGVRKSSRKAQTKRAA RKSRNTTKVPNLHLGIETVFKSVTRKRSCFSKPARSSAWGLLGNITHAFTMIDGPRLDEIENNGSQKARGGRGSRKRNNRAGGRSQRSSKKGCASASCIR LKVKVGKEACQTEANPKIMIPEVIDTKASAELVSNYGVESYQETSFEMSKLVHYAEDNVAEEGAGKQLQSFDIKLKAELHCDPYGMDVNLANKDMEGMVI FEKSPGDTVEDYIGVPLHTEVEALGATTEKRYTDPGTSPDSEVINLVAEGQVDARCPEDFHDAVLSSSKAFATDQGGNGKRRGKKKERLPQAANCSPAAA SLNKVKLAKKRGGRQRKADGLSSTEILTSSSSVNGLINTPSSKECSAEQVPLSRETELEVSGEVLTEEISMETKICVGGLDAELRSSESQISKNPLPSTK SRGNGVNKGRSKVSDSAKSRRANGCKDRGNDRKSVKKNKAKGKSVCDHVFYKVDDDPEIDENGKIDAVEDTAAEEVADLDTPSSGVMEQNLSPDNAWVRC DDCLKWRRIPVRLVESISQTHCQWICKDNMNKAFADCSFPQEKSNAEINAELGISDVDEDGCDAPSNYMELECRQTSVSKEYEFTRITTNQFLHRSRKTQ TIDEIMVCYCKAPVAGRLGCGDECLNRMLNIECVQGTCPCGDHCSNQQFQKRNYAKMTWERCGKKGFGLRLDEDISRGQFLIEYVGEVLDVHAYEARQKD YASKGHKHFYFMTLDGSEVIDACAKGNLGRFINHSCDPNCRTEKWVVNGEICIGLFALRDIKMGEEVTFDYNYVRVVGAAAKRCYCGSPQCRGYIGGDPT STEVVDQVDSDEEFPEPVMLEDGRVGGGLKNKISKTNFFGLSKDREIEFKTAVGNLEVATEIKDLTSQLTPAMSLSPSASEMNGLPGDFSSSSQQVETSP KAEDVMSQPTPAVQQEISMEETMNKSLYSSEKLRTSPTSTPTKILPDDVMINRKSKSAAAENKRVFVKSRFIIKTPHQSSLIKKGKSAGNLININKVQTI ASKPQFPLIKPKKLIESTSNGHFEAVQEKLNELLDSEGGISKRKDAPKGYLKLLLLTAASGAIRSGEAIQSNRELSMILDALLKTRSRVVLMDIINKNGL RMLHNIMKQYRRDFKKIPILRKLLKVLEHLAVREILTLEHISGGPPCPGMESFTESMLSLTEHDDKQVHQIARSFRDRWIPRHIRKHSYMDRDDGRMEIH RGSNCNRVSASHNHWHDQGVRHTEALNGVVESNLAMTSGGTAVHEDNSVNRVGSGARTRKRKTRWDQPAVGNIASSSLQHIKQNVNSGLVQQYESNPLLE LSKEVPVHVDKAGREYSYCPHCVRNYRWQDESSSADDRKQNIHEDVPPGFSSPINAALASNASSTVADPPQQNVFHLKFPVGMVVGHPQKKFNSRFPVSY GIPLSVMQQLGSPLAETVESWVIAPGMPFHPFPPLPPLPSCKKGTQPSCAVSSMEVDGEADRGQQDSHDPTTCPNESSPSMSGANQPDVNSPCPNDHQTF KRARGFSYDLGRRYFKQQKWNKVSPPWVRNRNGWGCVGDNSRGGMCSTDMGSLTNEQRNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	0	1
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	1.41	0.9078
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.011G003500 [exp]	1.73	0.8970
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	3.16	0.9035
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	3.16	0.8817
AT3G50370			unknown protein		Potri.007G043300 [exp]	4.00	0.8830
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	4.00	0.8707
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	6.16	0.8397	Pt-TOP1.2
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	7.74	0.8743	CHR928,PIE1.4
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	8.83	0.8572
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	9.38	0.8335

Compare expression of checked genes

Potri.005G182100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.