Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MADS2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20240 244 / 2e-82 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT5G23260 125 / 3e-35 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G54340 124 / 5e-35 MADS AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) AT5G15800 123 / 2e-34 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 122 / 4e-34 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G03710 119 / 8e-34 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 117 / 2e-32 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G42830 116 / 5e-32 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 116 / 5e-32 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 115 / 2e-31 MADS AGL6 AGAMOUS-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079000 [exp] 370 / 3e-132 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.012G125600 [exp] 150 / 4e-45 AT5G23260 183 / 2e-57 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.005G118000 [exp] 145 / 2e-43 AT3G54340 226 / 9e-75 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.015G125501 [exp] 144 / 1e-42 AT5G23260 192 / 6e-61 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.007G017000 [exp] 137 / 2e-40 AT3G54340 208 / 1e-67 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.002G028400 [exp] 125 / 4e-36 AT3G54340 229 / 7e-77 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.007G073000 [exp] 126 / 5e-36 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.008G098400 [exp] 122 / 2e-34 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.003G169600 [exp] 120 / 2e-33 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029719 [exp] 254 / 5e-86 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10042749 [exp] 243 / 9e-82 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10033187 [exp] 134 / 4e-39 AT3G54340 275 / 4e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10031960 [exp] 130 / 3e-37 AT3G54340 275 / 5e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10010630 [exp] 129 / 4e-37 AT3G54340 279 / 1e-95 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10017388 [exp] 121 / 6e-34 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003125 [exp] 119 / 6e-34 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10010184 [exp] 121 / 8e-34 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 120 / 2e-33 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 120 / 4e-33 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.005G182200.1 pacid=42802476 polypeptide=Potri.005G182200.1.p locus=Potri.005G182200 ID=Potri.005G182200.1.v4.1 annot-version=v4.1 ATGGGGAGAGGTAAGATTGAGATCAAGAGGATTGAGAACGCAAGCAACAGGCAGGTGACCTACTCTAAGAGGAAAAATGGGATTATAAAAAAAGCTAAGG AGATCACAGTTTTATGCGATGCTCAAGTTTCTCTTGTCATCTTTGCTAGTTCTGGAAGGATGCATGAGTACTGCAGCCCTTCCACTACGGTGGTCGATCT GTTGGACAAGTATCACAAGCAGTCTGGTAAGAGGCTGTGGGACGCTAAACATGAGAACCTCAGCAAAGAGATTGACAGAATCAAGAAAGAGAATGACAGC ATGCAGATTGAGCTGAGGCACCTGAAAGGGGAAGATATCTCATCCTTGCACCACACAGAGTTGATGGCCATAGAGGAAGCCCTCGATGCTGGCCTAGCCG CTGTCCGTAAAAAGCAGATGGAGTACCACAGCATGTTGGAGCAAAATGAAAAGATGTTGGATGAGGAGTTCAAGCGCCTCCAGTTCGTTCTGCAGCAACA AGAGATGGCTATGGGAGAGAATGCAATGGAGATGGAAAATGCTTATCATCAACAAAGGATGAGGGACTATAATTTCCAGGTGCCTTTCGCATTCCGCGTG CAGCCTATCCAGCCAAATTTGCAAGAGAGAATGTAA
AA sequence Show only first row Show all	>Potri.005G182200.1 pacid=42802476 polypeptide=Potri.005G182200.1.p locus=Potri.005G182200 ID=Potri.005G182200.1.v4.1 annot-version=v4.1 MGRGKIEIKRIENASNRQVTYSKRKNGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCSPSTTVVDLLDKYHKQSGKRLWDAKHENLSKEIDRIKKENDS MQIELRHLKGEDISSLHHTELMAIEEALDAGLAAVRKKQMEYHSMLEQNEKMLDEEFKRLQFVLQQQEMAMGENAMEMENAYHQQRMRDYNFQVPFAFRV QPIQPNLQERM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Potri.005G182200 [exp]	0	1	Pt-MADS2.2
					Potri.005G106550 [exp]	1.73	0.9334
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.001G261201 [exp]	8.36	0.8589
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.015G147800 [exp]	8.77	0.8764
AT3G21690			MATE efflux family protein (.1...		Potri.014G153100 [exp]	16.97	0.8664
AT5G53540			P-loop containing nucleoside t...		Potri.012G022985 [exp]	21.21	0.8404
AT1G75990			PAM domain (PCI/PINT associate...		Potri.002G017800 [exp]	22.22	0.8103
					Potri.003G026712 [exp]	27.64	0.8913
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.001G256600 [exp]	29.39	0.8214
					Potri.008G111650 [exp]	29.88	0.7968
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G134100 [exp]	30.33	0.8297

Compare expression of checked genes

Potri.005G182200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.