Plant FIBer expression Database

Potri.005G182300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21610 449 / 2e-148 wound-responsive family protein (.1.2.3)
AT1G77310 434 / 5e-142 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G078800
[exp]
1136 / 0 AT1G77310 417 / 4e-135 unknown protein
Potri.005G067800
[exp]
397 / 8e-128 AT1G77310 321 / 5e-99 unknown protein
Potri.007G101201
[exp]
355 / 1e-111 AT1G21610 286 / 2e-86 wound-responsive family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028676
[exp]
689 / 0 AT1G21610 486 / 3e-163 wound-responsive family protein (.1.2.3)
Lus10000853
[exp]
671 / 0 AT1G21610 459 / 3e-152 wound-responsive family protein (.1.2.3)
Lus10028666
[exp]
254 / 8e-75 AT1G77310 261 / 3e-78 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08729 HUN HPC2 and ubinuclein domain
Representative CDS sequence
>Potri.005G182300.3 pacid=42804446 polypeptide=Potri.005G182300.3.p locus=Potri.005G182300 ID=Potri.005G182300.3.v4.1 annot-version=v4.1
ATGGAGGAAGGGAGCAGCCGTGGCGGAGGAGAATCGTCATCTTCAAGGTTAACGCCGTCGTATGTGAAATTAGGAGACAGGCAAATATTCACTGTGGAGC
TCCGACCCGGAGAGACAACGTTCGTGTCGTGGAAAAAGCTTATGAAAGACGCCAATAAGGTCAATAGTGGATCCGCACCCCCCGCACCAGACCCGCCTCC
CGTTAACGCTCACCCTAACCTCGAGTCTCGAATTGCCCCCATAATTTTGTTTCAGGCACCAGTGACTGAAAATGAAGTGAATGATGACCCTCCTCCAAAT
CGTTTCAGTGCGGTAATCGAGAAGATTGAGCGTCTTTACACGGGTAAGGATAGCAGCGACGAGGAGGATCTAATGGATGTTCCTGACGATGATCAGTATG
ATACAGAAGATTCTTTTATTGATGATGCTGAGCTGGATGAATACTTTGAAGTTGATAATTCAGCAATAAAACATGATGGCTTCTTTGTTAACAGGGGGAA
GCTGGAACGCATAAATGAACCTCCTGTTGTGCCAAATGAAAAACCGAAGAAAAGGCAAAGAAAAGATTTATTAAAGGCACCTAATGACTCTGATGATGGT
CGCATTTCAAATAAACCTGCAAAGCTGGGAAAGTCAACTGTGGAGAAGTTGGCACCGCCTCCTGGAAAGAACTCTTCAAACCTGTCTCAAAATTTGACTA
TGATAAGTGACCAATACGAGAAGTTCCAGAGTCAATCAAATTCACCTGGAAATTCTTCCAAAAAGAAATCTGCAGAAACTAAAATGAAGTTGGATCCGTC
TTTGTCAGTGAGAGGTTCAAATGGTGATGCTTATGCATCCCTGGCAGAACCACAGGATATTGAAAAGTCAAAGACAGGAGGCCTCCAGCCTAAGAACCTC
ACTAGCAAACCTAAAGATGCAAGTGGACTCTCTGATTCTTCAAATCAGAAGTCTCATGAAAAAAGTGCTTATGTGCAACCCAAGTTGCAAACTGCAAAAA
CAGTATACAATGCTGAAGATCTTGAATCATCAGCTAGATCAAAAGAAAAGAATGGGGTCCGTGAACTTCCTGATCTCAATCTTAATATTTCTGATGGCAA
GATTTACACGCAAGCAGCAAAAACTTCACATGTCCACAGAAAGGATGGTTCGAGTGTCAGGCCTAAAAGTTCAATACTAGAGAAGGCTATCAGGGAGTTA
GAGAAGATGGTTGCAGAATCAAGGCCACCTGCTATGGAGAATCAAGAGACTGATACTTCAGGCCAGGGAATTAAAAGAAGATTGCCTACAGAAATAAAGC
TGAAGCTTGCCAAAGTTGCCAGACTAGCAGCAAGCCAAGGGAAAATGTCAAAAGAGTTACTGAATCGTCTAATGAGTATTCTTGGTCACTTAATTCAGCT
CAGAACACTGAAGAGAAACTTGAAAATAATGATTAACACAGGCTTGTCAGTGAAGCAGGAGAAAGATGATAGGTTTCAACAGATAAAGAAGGAGGTTGCT
GAGATGATTACGACACGTATCCCTTCTGTGGAGTCTAATGCATTAGTTCAGCAAGCTGGAGCATCTGATGATTTTCAAGAGATTGGTTCTGAAGAAAAAG
GGGCCCTTAAAAAGAAATTTAGCATGGATGTTGTGTTGGAGGACAAGATTTGTGATCTCTATGACCTTTTTGTTGAGGGATTGGATGAAGATTCAGGTCC
ACAAGTCAGAAAGTTGTATGTGGAGCTTGCACAATTGTGGCCAAGTGGTCTTATGGACAACCATGGGATCAAGCGTGCAATCTGTAGGGCAAAAGAGAGA
CGAAGGGTTGTATACTGCAGAAATAAGGATCTGGAGAAAATGAAGAGTAAAAAGATGTTGACTCTTAAACAAGAGGAGGGTGTTCGAGCTGAGTCTGGTT
TAGTTGCTCAGCCACATGTGCAAGAAAGGGTGGCCATGGAAATGGCTGGTCCTGTTTTGGCTTTAGCTAGTAAGCCAGTTTCCAATTCCGCAGCAGCATC
TGTTCGGTTACCCAGTCCTTCAGCAAACGGTCTTGTAGTGGACAAGCTCAAAGAGAAGCCGAAAGGAAGTTCAAGCAATTCCATGGATGAATCAAAGATG
GGTGTCGATGGTGCTCTGACAAAGAAGAAGGTAAAGAGGAAACCAGAACAAGAGTTGGATGAAACACATCTCCGTTCAGAGAAGTTGCATCCCCAATCTA
GTGGGGAAAGACACAAGTCACTTAAGCATGCTTCTGTTCTTCCCCCCCAAAAGTTAAACCTTCCATCAACTGCCCCTTCGAGTTTCGAACCATCTAGCTG
A
AA sequence
>Potri.005G182300.3 pacid=42804446 polypeptide=Potri.005G182300.3.p locus=Potri.005G182300 ID=Potri.005G182300.3.v4.1 annot-version=v4.1
MEEGSSRGGGESSSSRLTPSYVKLGDRQIFTVELRPGETTFVSWKKLMKDANKVNSGSAPPAPDPPPVNAHPNLESRIAPIILFQAPVTENEVNDDPPPN
RFSAVIEKIERLYTGKDSSDEEDLMDVPDDDQYDTEDSFIDDAELDEYFEVDNSAIKHDGFFVNRGKLERINEPPVVPNEKPKKRQRKDLLKAPNDSDDG
RISNKPAKLGKSTVEKLAPPPGKNSSNLSQNLTMISDQYEKFQSQSNSPGNSSKKKSAETKMKLDPSLSVRGSNGDAYASLAEPQDIEKSKTGGLQPKNL
TSKPKDASGLSDSSNQKSHEKSAYVQPKLQTAKTVYNAEDLESSARSKEKNGVRELPDLNLNISDGKIYTQAAKTSHVHRKDGSSVRPKSSILEKAIREL
EKMVAESRPPAMENQETDTSGQGIKRRLPTEIKLKLAKVARLAASQGKMSKELLNRLMSILGHLIQLRTLKRNLKIMINTGLSVKQEKDDRFQQIKKEVA
EMITTRIPSVESNALVQQAGASDDFQEIGSEEKGALKKKFSMDVVLEDKICDLYDLFVEGLDEDSGPQVRKLYVELAQLWPSGLMDNHGIKRAICRAKER
RRVVYCRNKDLEKMKSKKMLTLKQEEGVRAESGLVAQPHVQERVAMEMAGPVLALASKPVSNSAAASVRLPSPSANGLVVDKLKEKPKGSSSNSMDESKM
GVDGALTKKKVKRKPEQELDETHLRSEKLHPQSSGERHKSLKHASVLPPQKLNLPSTAPSSFEPSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21610 wound-responsive family protei... Potri.005G182300
[exp]
0 1
AT5G63320 NPX1 nuclear protein X1 (.1.2.3) Potri.012G094300
[exp]
3.31 0.8977
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Potri.001G190000
[exp]
4.24 0.8920 PAFA901
AT2G44950 RDO4, HUB1 REDUCED DORMANCY 4, histone mo... Potri.002G141300
[exp]
4.47 0.8874
AT5G60410 ATSIZ1, SIZ1 DNA-binding protein with MIZ/S... Potri.010G219600
[exp]
6.00 0.8862
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Potri.005G107600
[exp]
6.16 0.8947 Pt-RPB1.1
AT5G64390 HEN4 HUA ENHANCER 4, RNA-binding KH... Potri.017G042500
[exp]
6.63 0.8807
AT1G55540 EMB1011 Nuclear pore complex protein (... Potri.003G223400
[exp]
7.21 0.8896
AT3G05680 EMB2016 embryo defective 2016 (.1.2) Potri.016G069100
[exp]
9.16 0.8861
AT2G36720 Acyl-CoA N-acyltransferase wit... Potri.006G120200
[exp]
10.95 0.8834
AT2G19390 unknown protein Potri.006G146600
[exp]
11.31 0.8748

Potri.005G182300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.