Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77320 1011 / 0 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT3G43930 65 / 1e-10 BRCT domain-containing DNA repair protein (.1.2) AT4G02110 59 / 2e-08 transcription coactivators (.1) AT1G67180 52 / 2e-06 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT1G80420 47 / 5e-05 ATXRCC1 BRCT domain-containing DNA repair protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197400 [exp] 64 / 7e-10 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.014G122400 [exp] 63 / 1e-09 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.006G218800 [exp] 62 / 2e-09 AT2G26270 522 / 0.0 unknown protein Potri.004G106000 [exp] 53 / 1e-06 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.001G178100 [exp] 49 / 2e-05 AT1G80420 339 / 2e-115 BRCT domain-containing DNA repair protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000854 [exp] 1044 / 0 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10028677 [exp] 654 / 0 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10028674 [exp] 248 / 2e-76 AT1G77320 209 / 6e-63 meiosis defective 1, transcription coactivators (.1.2) Lus10028668 [exp] 150 / 4e-41 AT1G77320 139 / 3e-38 meiosis defective 1, transcription coactivators (.1.2) Lus10010017 [exp] 66 / 2e-10 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10034088 [exp] 57 / 7e-08 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10001455 [exp] 50 / 1e-05 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10002431 [exp] 49 / 1e-05 AT4G02110 184 / 2e-49 transcription coactivators (.1) Lus10025038 [exp] 47 / 7e-05 AT4G02110 368 / 1e-109 transcription coactivators (.1) Lus10035899 [exp] 44 / 0.0006 AT1G80420 333 / 4e-113 BRCT domain-containing DNA repair protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain CL0459 [poplar] [flax] BRCT-like PF12738 [poplar] [flax] PTCB-BRCT twin BRCT domain
Representative CDS sequence Show only first row Show all	>Potri.005G182500.4 pacid=42802324 polypeptide=Potri.005G182500.4.p locus=Potri.005G182500 ID=Potri.005G182500.4.v4.1 annot-version=v4.1 ATGTTGAATACGAGGCCTTTCAAGGGAGCGAACGTGTTTATTTCCAGGAACCTGGTTCCGCCTGAGGTCTTCGACGCTCTTCTCGACGGTCTCAAGCTCA ACGGTGCCGATGTATTTCTCTGCTGCGATCCTTCGCGACACGGCCCCAACGATTTCCACATAATCTCTTCTCCCGATCATGAGAAATTCGAAGATCTTAA AGCTAAGGGCTGTAATTTGCTAGGTCCTCATTGTGTGCTTTCTTGTGCAAAAGAACATAGACCACTTCCTAAACAAGGCTTCACTTGCTGCCTTGCAATG GATGGTGTCAAAGTACTCGCGTCTGGCTTTGACATGGATGAAAAGGTTAAGATAGAACAGATGGTAACAGCAATGGGTGGGGTGTTGCAGACTAAAGCAT CTGTGGATGTTAGATTTGTCGTAGTGAAGAATGTTTCTGCTGCAAAGTACAAGTGGGCTTTGAATGTGCTGAAGAAACCAATTGTCACTATTAATTGGTT ATATCAATGCTGGAATGAGCACCGTGTTGTTCCTCAGGAATCGTACAGGGTTCTTCCTTTTTCTGGATTAACAATATGTGTTACAAGAATTCCAGCAGAT AAAAGGAAGGAGATTGAAAAACTCATCATACAAAATGGTGGGAAATATTCTGCTGAGCTGACCAAGAAGTGTACACATTTGATATCTGATGCTCCTGAAG GTGACAAATACAAGGTTGCCAGAAGATGGGGCCACATTCATATTGTAACGAGGAAATGGTTTGATCAGTCTATTGCTTGCAAAGCATGTCTTAATGAGGA GTCGTATCCTGTCCAGGGTGGTTGTCTATCTTCAAGCAAAACAGTGAGGGGTCCCATGATTGCACACCACAGTCAAGACAAGTGTGTTGGGAACACACTT TCTGTCCCATCCTCAGTGGCTTCAGAATCAAATTTGCCTGCTACTCCGTGTGCTGGGTCTTCAGATCCAGACTTGGAAGCTACACTCTCACAGAACATGT CTTCTATGTTTTCAGATCGTCCTGTTTCTATAAAAGTGGTGGACTGTGATAAGCCTATGGTAAAGGAAACAATCGAAACAAACCTTGATGGTTGTGTTGC CAATGACTCTCAATCTGAAGATAGTGATATGTACTTGTCGGAGTGTAGAATATCACTCGTTGGTTTTGAAGCTCCTGAATTACGCAAACTAGTTAATATG GTGCGGAGAGGTGGGGGGTCGCGGTATATGACTTTCAATGATAAATTGACCCATATCGTTGTTGGGGCTCCGACAGAGGTTGAAAAGAAGGAGTTACGAG GACTTGCAGCTTCTGGTGTTATTAATGTTGTTAGAACTGCCTGGCTTGAAGATTGTGATCGTGAAAAGAAAGAGATCCCTGTTCTCTGTCAGCATATTGC ATATGATTTACTTCTTCCCAAAGATCCTGTGAGCTCTCTCAAAGGAACAATTACAGGCATGGCTGGTAATCAAGCTAAGAGTTCCATTGTTCATCCAAGC ATTCACTCTGATCAGGTGCTTGGTGGTGCAAATTCTGGCCTTAGAATGCCATCATTATTGAAAGAAAACAGAGATGTGAAACCAGAAATGAACATAAATT TGAGTATCCCTGTGGAAGGGACTGTGAGGTGGTCCCAACAAAATGTATTTCCTGTTGTAAAAGATCCAAAGAAGGGTACAAAAAGGACGCAAAATGATTG CAGTGATCAAGATGTTCAAAGGATGAAGTCAATAAATGTATTTCAGGGGAAAACATTTTGTTTTTCAAAAAGCTTTCCTGAAGATAGGAGATCTGAAATT GTGCAATGGATCAATCTAGGAGGAGGTGAGGTATTGATAGATAAAGCAAAACAGAAAGTGCACTTCATGATTGAATGCCATGGTGTGATATCTAGGTCTG CTGATGATCCCTGGACTCTTTATGTGTCCAGTCACTGGGTCCGGTCTTGTTTGGAGGGTGGATGTCTGCTGGATATTGGTAGTCATATTATATATTCTCC ACTTCCCTGCCGGATTCCTTTGCCTGGTTTTGAAAAATTCCGCTTTTGCATCTCACAGTATGAAGAGAAAGATAGATTGCTATTAAGAAACTTATGCTTT GTTCTTGGAGCTAAATTTGTGGAGAAATTGACTAGAAAGGTCACACATTTATTGTGCAAGTTTACCAGCGGGCCAAAGTATGAAGCTGCCTGTAAATGGG ACATATGCTTGATTACATCTGAGTGGATTTACGAGTGTGTCAGGCAGAATGAAGTTGTTGCAGTGGATCAGTTTCGCCCAAAAGAAATTACCTCTCAAGA TGAAGAGGCAGGATTATGCACTGAGAGCCAGTTTCCTACACAAGATGTTCAAATGATATCTGGAGAGAATGCATCTCAATTTATTACTCAGCCACAAGGC CTTAGAAACTCATCAGCCCAAAATGGGGGTAGTTTAATCAACAGCTTCATGGAAGAGGCCCAACAATCTATTGATATCTGTAAAAAGGCAAAGATTTTTA AAGATAATGATCAGAAGAGTCTGCTTTCATCTCGAGTTCATTTGAGTGATTCTACCCTGAATATGAATTCCACTGAAGGTGACAACGCAAAAGATAATGG AGAATCTTCTCATGACATTCCTGATGTAGCTGCTGCTATTGAGGACTTGTTGGAGCAGACAAGCAAGATTCAAGATCAGAAGTCACCAGGGAGGAGTGGG TGTGATAAGAGTCTATTTTCATCTGACTGTTCAATGCTTGGTGAAGGCCATGGGGGTTCTCCCTCTGTGATCGGGTTACCGAAGCACTGGTTAAGTAGGA CTGGGAGAAGAGATGAGCTATCCAGTCCCAAAGAAGCAAATGGAGGACCATATGATAGTTTCAGCGAAACACAAACAGACTCTCAGGTTGTTGGTTATGA AGAAGATTTGACAGGGAGGCAAATGCTCATAGATAGAGTTCGTACCAGAAGTAGCATGACCTGA
AA sequence Show only first row Show all	>Potri.005G182500.4 pacid=42802324 polypeptide=Potri.005G182500.4.p locus=Potri.005G182500 ID=Potri.005G182500.4.v4.1 annot-version=v4.1 MLNTRPFKGANVFISRNLVPPEVFDALLDGLKLNGADVFLCCDPSRHGPNDFHIISSPDHEKFEDLKAKGCNLLGPHCVLSCAKEHRPLPKQGFTCCLAM DGVKVLASGFDMDEKVKIEQMVTAMGGVLQTKASVDVRFVVVKNVSAAKYKWALNVLKKPIVTINWLYQCWNEHRVVPQESYRVLPFSGLTICVTRIPAD KRKEIEKLIIQNGGKYSAELTKKCTHLISDAPEGDKYKVARRWGHIHIVTRKWFDQSIACKACLNEESYPVQGGCLSSSKTVRGPMIAHHSQDKCVGNTL SVPSSVASESNLPATPCAGSSDPDLEATLSQNMSSMFSDRPVSIKVVDCDKPMVKETIETNLDGCVANDSQSEDSDMYLSECRISLVGFEAPELRKLVNM VRRGGGSRYMTFNDKLTHIVVGAPTEVEKKELRGLAASGVINVVRTAWLEDCDREKKEIPVLCQHIAYDLLLPKDPVSSLKGTITGMAGNQAKSSIVHPS IHSDQVLGGANSGLRMPSLLKENRDVKPEMNINLSIPVEGTVRWSQQNVFPVVKDPKKGTKRTQNDCSDQDVQRMKSINVFQGKTFCFSKSFPEDRRSEI VQWINLGGGEVLIDKAKQKVHFMIECHGVISRSADDPWTLYVSSHWVRSCLEGGCLLDIGSHIIYSPLPCRIPLPGFEKFRFCISQYEEKDRLLLRNLCF VLGAKFVEKLTRKVTHLLCKFTSGPKYEAACKWDICLITSEWIYECVRQNEVVAVDQFRPKEITSQDEEAGLCTESQFPTQDVQMISGENASQFITQPQG LRNSSAQNGGSLINSFMEEAQQSIDICKKAKIFKDNDQKSLLSSRVHLSDSTLNMNSTEGDNAKDNGESSHDIPDVAAAIEDLLEQTSKIQDQKSPGRSG CDKSLFSSDCSMLGEGHGGSPSVIGLPKHWLSRTGRRDELSSPKEANGGPYDSFSETQTDSQVVGYEEDLTGRQMLIDRVRTRSSMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	0	1
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	3.87	0.7348	Pt-XPO1.1
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	4.24	0.7703
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	4.89	0.7465	CHR919
AT3G17340			ARM repeat superfamily protein...		Potri.010G152700 [exp]	6.00	0.7400
AT2G25970			KH domain-containing protein (...		Potri.018G055300 [exp]	10.58	0.6692
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Potri.003G018900 [exp]	11.31	0.6990
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.003G000500 [exp]	11.83	0.7153	CAND1.2
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Potri.005G067100 [exp]	14.14	0.6922
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	14.69	0.7057
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.014G024200 [exp]	14.83	0.6078

Compare expression of checked genes

Potri.005G182500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.