Plant FIBer expression Database

Pt-NADK2.1 (Potri.005G182600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-NADK2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21640 700 / 0 ATNADK2, NADK2, ATNADK-2 NAD kinase 2 (.1.2)
AT3G21070 276 / 3e-82 NADK1, ATNADK-1 NAD kinase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G078700
[exp]
1634 / 0 AT1G21640 1191 / 0.0 NAD kinase 2 (.1.2)
Potri.001G256100
[exp]
272 / 1e-80 AT3G21070 774 / 0.0 NAD kinase 1 (.1.2)
Potri.009G051500
[exp]
271 / 9e-80 AT3G21070 754 / 0.0 NAD kinase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000856
[exp]
1230 / 0 AT1G21640 1205 / 0.0 NAD kinase 2 (.1.2)
Lus10029717
[exp]
1204 / 0 AT1G21640 1154 / 0.0 NAD kinase 2 (.1.2)
Lus10028677
[exp]
1137 / 0 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2)
Lus10003178
[exp]
276 / 1e-81 AT3G21070 768 / 0.0 NAD kinase 1 (.1.2)
Lus10009958
[exp]
235 / 2e-67 AT3G21070 700 / 0.0 NAD kinase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0240 PFK PF01513 NAD_kinase ATP-NAD kinase
Representative CDS sequence
>Potri.005G182600.2 pacid=42804259 polypeptide=Potri.005G182600.2.p locus=Potri.005G182600 ID=Potri.005G182600.2.v4.1 annot-version=v4.1
ATGGTGCTATGTCTCTTCCACGTGTCTATCATCATGAATAGGTTATCTCCGGTCACCGGAATATTGACGTCATGTCCATGCTCGTTCAAGCTTCATAACA
GAGACAGTAAACTGGTGGGTTGTGGGTTTGGTTTGCAAAGAAAGGAGAGGTTAAAGAGGAAGCTTAAGTTTGTCGTCAGTGCGGAGTTATCCAAGTCTTT
CTCTGTGAACTTGGGTTTGGACTCTAAGAAGATCGGTCAGTCTCATGATCCATCACAGCTGCCCTGGATTGGTCCAGTTCCCGGGGACATCGCTGAAATC
GAGGCTTATTGTAGAATATTTAGAGCAGCTGAACAGCTTCATGCTGCATTGATGGATACATTGTGCAATCCATTGACTGGAGAGTGTAAAATTTCTTATG
ATTTTACGCCAGAGGAAAAGCCATTGTTGGAAGATAAAATAGTATCTGTGCTTGGCTGCATCCTTTCGCTTTTGAATAAAGGAAGAGAAGATGTTCTTTC
TGGAAGATCTTCCATCATGAGTTCCTTTCGGGGTGCAGAAGTAAGTGCAATGGAGGATAAACTTCCACCTCTAGCCATTTTCAGGAGTGAGATGAAAAGG
TGCTGTGAGAGTTTGCATGTTGCTCTTGAAAACTATTTGACACCTGACTATGATCGAAGCCTGGATGTATGGAGGAAACTGCAGAGGTTGAAGAATGTAT
GTTATGATTCTGGTTTTCCCCGGCTTGATGATTGTCCTTGTCATATGCTGTTTGCAAATTGGAATGCAGTTTATTTATCCACTTCTAAAGAAGATCTAAT
GTCGAAAAATTCTGAGGCTGCATTTTGGAGGGGTGGGCAGGTAACAGAGGAAGGTCTAAAGTGGTTACTGGAGAGAGGATTCAAGACCATTGTAGATCTT
AGGGCGGAAATTATTAAGGATAACTTGTATGAAGCAGAGGTAGCTGATGCTATTGCAGCTGGGAAGGTTGAATTGATTAAAATTCCTGTTGAAGTTAGGA
CAGCACCTTCAATGGAGCAGGTTGAAAAGTTTGCTTCTTTGGTTTCAGATTTCAGCAAAAAGCCCATCTATCTCCACAGCAAGGAAGGAGTATGGAGAAC
TTCTGCTATGGTCTCCAGATGGAGGCAGTATATGACTCGCAGTGCATCTCAGATTACCACTCAGAGAGATGTGGGAAGTAGGCGGGGACCTTCCATCATC
ATTAGAGGGGGGTCCCTCTCAGGACAGGAAAATGGATCTCTGCCAGAGGCTTTGGATAAAGATCATGGTTCAAATGGAGCGTCTAGTGAAGTTGTCTCTC
CAAAGGATGAAAATGGTCAGAGCATTAACAGGGCATACAATGACCATGCTTCTGTTCAGGGTTCTATTCCATTAGAAATGGTAGATAATGGGGTAGGATT
CTCAGCAAACATCTCCATGGAAGCTGACCCTCTGAAGGCTCAGGTCCCTCCTTACGATTTCTTTTCCAAAGCAGAGATGTCCAGATTTTTCCGAACTAAA
AAAATCACACCTCCAACATACTCTAAGTATCAGTTGAAAGGGTTTGAAAAGTTGCTTGTTTCTAGAACAACAGGTGTTGCGACAGTCCCAAAAGTTGATG
GTATTGATCCCGAGTTAGGGTTCGTGGAGGCAAAAAGATCCTATGGATTAGTAAGAGGTAAAAATGCATCTCCAAAGCCTCAGAGCTCACCTGCTGACAG
TGCCAAGCATCTGAATGGCAGTAGTAATACTTCTGCTGGTTCAGGCAATGGTGTTGTTTCCTCAGCCTCCAGTGATGATGACATGTGCACGATTGAAGGA
AACATGTGTGCTTCTGCAACTGGTGTTGTGAGGGTGCAGTCAAGAAGGAAAGCAGAGATGTTTCTAGTGCGGACAGATGGATTCTCTTGTGCCAGAGAGC
AGGTAACAGAATCTTCCTTGGCCTTCACTCATCCTAGCACCCAGCAACAGATGCTTATGTGGAAAACTACGCCAAAGACAGTATTGTTGCTGAAGAAGCT
GGGGAAAGAACTCATGGAAGAAGCAAAAGAGGTTGCCTCCTTCTTGTATCACCAAGAGAAAATGAATGTTCTTGTTGAACCTGATGTTCATGACATATTT
GCTAGAATTCCAGGGTTTGGATTTGTTCAGACCTTTTATAGTCAAGATACCAGTGATCTTCATGAGAGGGTTGATTTTGTGGCATGCTTGGGGGGAGATG
GGGTTATACTTCATGCATCAAATTTATTTCGAGGGGCGGTTCCACCTGTTGTGTCCTTCAACCTTGGATCTCTTGGATTTCTGACTTCTCATTATTTTGA
AGACTACAGGCAGGACTTGAGACAGGTTATTCATGGGAATAAGACCTTGGACGGTGTTTATATAACTCTTAGAATGCGCCTCCGGTGCGAAATCTTTCGC
AATGGTAAAGCAGTGCCTGGGAAAGTTTTTGATGTCTTAAATGAGGTGGTGGTTGATCGGGGTTCTAATCCATATCTTTCTAAGATTGAATGCTATGAAC
ATGACCGACTTATAACCAAAGTGCAAGGTGATGGAGTCATAGTGGCCACACCTACAGGAAGCACTGCTTATTCCACAGCCGCAGGAGGTTCCATGGTGCA
TCCAAATGTTCCTTGCATGCTGTTTACCCCTATCTGCCCGCATTCTCTGTCATTTAGGCCAGTCATCCTTCCAGATTCTGCAAGACTTGAATTGAAGATT
CCAGAGGATGCTCGAAGTAATGCATGGGTCTCTTTTGATGGGAAGAGGAGGCAGCAACTCTCAAGAGGGGATTCGGTCCGGATATCTATGAGCCAGCACC
CGCTTCCAACAGTCAACAAATCTGATCAAACAGGCGATTGGTTTCACAGCTTGATCCGCTGTCTAAACTGGAATGAGAGACTAGATCAGAAGGCCCTTTG
A
AA sequence
>Potri.005G182600.2 pacid=42804259 polypeptide=Potri.005G182600.2.p locus=Potri.005G182600 ID=Potri.005G182600.2.v4.1 annot-version=v4.1
MVLCLFHVSIIMNRLSPVTGILTSCPCSFKLHNRDSKLVGCGFGLQRKERLKRKLKFVVSAELSKSFSVNLGLDSKKIGQSHDPSQLPWIGPVPGDIAEI
EAYCRIFRAAEQLHAALMDTLCNPLTGECKISYDFTPEEKPLLEDKIVSVLGCILSLLNKGREDVLSGRSSIMSSFRGAEVSAMEDKLPPLAIFRSEMKR
CCESLHVALENYLTPDYDRSLDVWRKLQRLKNVCYDSGFPRLDDCPCHMLFANWNAVYLSTSKEDLMSKNSEAAFWRGGQVTEEGLKWLLERGFKTIVDL
RAEIIKDNLYEAEVADAIAAGKVELIKIPVEVRTAPSMEQVEKFASLVSDFSKKPIYLHSKEGVWRTSAMVSRWRQYMTRSASQITTQRDVGSRRGPSII
IRGGSLSGQENGSLPEALDKDHGSNGASSEVVSPKDENGQSINRAYNDHASVQGSIPLEMVDNGVGFSANISMEADPLKAQVPPYDFFSKAEMSRFFRTK
KITPPTYSKYQLKGFEKLLVSRTTGVATVPKVDGIDPELGFVEAKRSYGLVRGKNASPKPQSSPADSAKHLNGSSNTSAGSGNGVVSSASSDDDMCTIEG
NMCASATGVVRVQSRRKAEMFLVRTDGFSCAREQVTESSLAFTHPSTQQQMLMWKTTPKTVLLLKKLGKELMEEAKEVASFLYHQEKMNVLVEPDVHDIF
ARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHYFEDYRQDLRQVIHGNKTLDGVYITLRMRLRCEIFR
NGKAVPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKI
PEDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKSDQTGDWFHSLIRCLNWNERLDQKAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21640 ATNADK2, NADK2,... NAD kinase 2 (.1.2) Potri.005G182600
[exp]
0 1 Pt-NADK2.1
AT1G51310 transferases;tRNA (5-methylami... Potri.001G259000
[exp]
3.00 0.8780
AT1G25440 CO COL16 B-box type zinc finger protein... Potri.010G125100
[exp]
3.46 0.9126 COL6.3
AT5G24490 30S ribosomal protein, putativ... Potri.012G005800
[exp]
6.92 0.8928
AT2G21710 EMB2219 embryo defective 2219, Mitocho... Potri.009G116200
[exp]
7.93 0.9159
AT4G35440 CLCE, ATCLC-E, ... chloride channel E (.1.2) Potri.004G209900
[exp]
12.00 0.8826
AT1G29260 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin... Potri.011G066600
[exp]
15.96 0.7733
AT4G01030 pentatricopeptide (PPR) repeat... Potri.014G097000
[exp]
19.26 0.8824
AT1G75380 ATBBD1 bifunctional nuclease in basal... Potri.002G032500
[exp]
20.49 0.8761
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Potri.011G164100
[exp]
21.16 0.8396
AT5G14370 CCT motif family protein (.1) Potri.001G339200
[exp]
22.97 0.8465

Potri.005G182600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.