Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77280 848 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 744 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 674 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 370 / 6e-121 Protein kinase superfamily protein (.1.2.3) AT2G16750 373 / 7e-120 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G65530 271 / 5e-83 Protein kinase superfamily protein (.1) AT2G18890 267 / 3e-82 Protein kinase superfamily protein (.1.2) AT5G18910 268 / 4e-81 Protein kinase superfamily protein (.1) AT1G66460 264 / 4e-80 Protein kinase superfamily protein (.1) AT5G35960 259 / 1e-78 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077900 [exp] 1201 / 0 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 801 / 0 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 787 / 0 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 526 / 4e-178 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 512 / 9e-173 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 377 / 3e-119 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.013G028100 [exp] 285 / 1e-87 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.018G096100 [exp] 285 / 1e-86 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 281 / 6e-85 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028661 [exp] 939 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 939 / 0 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 674 / 0 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 513 / 3e-173 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 435 / 8e-143 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 375 / 4e-120 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 314 / 2e-98 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 316 / 4e-98 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10035949 [exp] 272 / 1e-82 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 268 / 2e-79 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.005G182800.1 pacid=42802841 polypeptide=Potri.005G182800.1.p locus=Potri.005G182800 ID=Potri.005G182800.1.v4.1 annot-version=v4.1 ATGAGAATGCTGCTGCGTGAAGGAGAGGGAATGGCAGACTCCGGTGACAGTACGGTGATAGTAGGAGTCAAGCTTGACCCAGCGAGTAGAGAGCTGTTGA CTTGGGCTTTGGTCAAAGTGGCTCAACCTGGAGATACTGTTATTGCTCTTCATATCCTTGATAATAATGAAATCGTGGATCGTGAAGGGAAATCTTCGCT TCTCTCGCTTGTGAAAGCTTTTGACAATGTTCTTGCTGTTTATGAAGGTTTCTGCAACTTGAAACAGGTGGATCTCAAGCTCAAGATATGCAGAGGTTCA TCAATTCGGAGAATTTTAGTCAGGGAAGCAAAATCTTATACAGCAACAAAGGTTATTGTTGGAGCTACCAGGAATCATCTTTCAATCTGGCCATCAACAT CTGTGGCCAAGTATTGTGCTAAAAAACTACCAAAGGATTGTTCTGTTCTTGCTTTCAATAATGGGAAAGTTGTGTTTCAAAGGGAGCGCACTCCAAATAA TACCGGAACTAAAGATCATGTTCAGAATGGTTTGCTTGGTGTTGTTCACAAGACAATTTCATTTGAGAAAAATTCTAGAGTATCGAATGAAGGCGGTACC AACGAGGCCTCTAGGAACGATCAGGACAATGGCCTGACTTTGGAGCAGGTGTTAATGAAAGCTCGTTCCAGTAGTTTGGCAAGTATCATGAAAGAGAACT GCTCAGTTTGTGGATCGGTTATGAAACCTGCTGATGATTCCTGTAATCAATCTGCAGAAGCATCTTGTGGTGACAGGGATGGCGATGACAAGTCTTTAGC TCTAGTTCCAGTACCAAGGGTAGAGGAACCCACGAGTTCAGTTTCCACGTTAATTGGTCAAGTGCCTGAATTGAAACCTGGTTGGCCACTACTCCGTAGT TCTGTTTTACCGAATCGAAAAACATCAAATAGATCTTTAGTGAGGCAGATCTCTGTGGTTCAATGGGCAATGAGGTTGCCCAGCAGGCAACTCTCACTAT CCACTGTCAATTCAGATCACAAACAGGATGTTTCTGATAAGGGTGAAGAGCAATTGAATTTAGATGGAGAAAGTGGTGCAATTGTTGCCGTTGGAATGGA GACAGCGACAGCTCCGCTTTCTCCTGACCACAATTCGAGAAGTCTGCCAAAAGAATTGGAGGGTCTTCATGAGAAATACTCAGCAACTTGCAGATTGTTT CAGTGCCAAGAACTTCTCTCAGCCACGTCCAACTTCTTGGCTGAAAATTTGATTGGGAAAGGGGGCAGCAGTCAGGTCTATAAAGGTTGCCTTCCCGACG GCAAGGAACTTGCTGTGAAAATCTTAAAGCCATCTGAAGATGTACTGAAGGAGTTTGTTCAGGAAATTGAGATTATCACTACCTTATCTCACAAGAACAT CATTTCTCTCTTGGGGTTCTGTTTTGAGGGAAAAAATCTTCTCTTGGTTTACGATTTCCTGTCAAGAGGAAGTCTTGAAGAGAATCTTCACGGTAACAAG AAGGACCCACGTGCATTTGGTTGGAATGAGAGATATAAGGTGGCTTTAGGAATCGCAGAGGCCTTGGACTATCTTCATAGCTGCAGTGCTCAACCTGTGA TCCACAGAGATGTTAAATCATCAAATATCCTATTATCTGATGATTTTGAGCCACAGCTCTCTGATTTTGGACTTGCTAAATGGGCACCGACCTCCTCATC TCATATAATCTGCAATGATGTTGCTGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGCAAAGTAAACAACAAGATTGATGTCTATGCATTT GGTGTTGTACTCCTCGAGCTTCTTTCAGGGAAAAAGCCAATAAGCAATGATCTTCCTAAAGGCCAGGAGAGCCTAGTTATGTGGGCAAAACCAATCCTAA ATGGTGGTAAGGTTTCCCAATTGTTAGACCCAATCTTGGGTGATAGCTGTGATCGTGATCAGATGGAGAGGATGGTTTTAGCCGCCACTCTCTGTGTAAG ACGTGCCCCACGAGCTAGGCCTCAAATGAGCCTTGTTGTGAAGCTCCTCCAAGGAGATGCGGAAGTGACCAGGTGGGCACGGCTGCAAGTTAATGCTGTG GAAGAATCTGACGTGTTGGATGATGAAGCATGTCCGCGTTCTAATCTCCAGTCCCATCTTAACCTTGCATTGCTGGATGTTGAGAATGATTCACTCTCCT CGAGCAGCTTAGAGCAGAGCATATCATTGCAGGATTACTTGCAAGGCAGGTGGAGCCGCTCATCAAGCTTAGACTAA
AA sequence Show only first row Show all	>Potri.005G182800.1 pacid=42802841 polypeptide=Potri.005G182800.1.p locus=Potri.005G182800 ID=Potri.005G182800.1.v4.1 annot-version=v4.1 MRMLLREGEGMADSGDSTVIVGVKLDPASRELLTWALVKVAQPGDTVIALHILDNNEIVDREGKSSLLSLVKAFDNVLAVYEGFCNLKQVDLKLKICRGS SIRRILVREAKSYTATKVIVGATRNHLSIWPSTSVAKYCAKKLPKDCSVLAFNNGKVVFQRERTPNNTGTKDHVQNGLLGVVHKTISFEKNSRVSNEGGT NEASRNDQDNGLTLEQVLMKARSSSLASIMKENCSVCGSVMKPADDSCNQSAEASCGDRDGDDKSLALVPVPRVEEPTSSVSTLIGQVPELKPGWPLLRS SVLPNRKTSNRSLVRQISVVQWAMRLPSRQLSLSTVNSDHKQDVSDKGEEQLNLDGESGAIVAVGMETATAPLSPDHNSRSLPKELEGLHEKYSATCRLF QCQELLSATSNFLAENLIGKGGSSQVYKGCLPDGKELAVKILKPSEDVLKEFVQEIEIITTLSHKNIISLLGFCFEGKNLLLVYDFLSRGSLEENLHGNK KDPRAFGWNERYKVALGIAEALDYLHSCSAQPVIHRDVKSSNILLSDDFEPQLSDFGLAKWAPTSSSHIICNDVAGTFGYLAPEYFMYGKVNNKIDVYAF GVVLLELLSGKKPISNDLPKGQESLVMWAKPILNGGKVSQLLDPILGDSCDRDQMERMVLAATLCVRRAPRARPQMSLVVKLLQGDAEVTRWARLQVNAV EESDVLDDEACPRSNLQSHLNLALLDVENDSLSSSSLEQSISLQDYLQGRWSRSSSLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77280			Protein kinase protein with ad...		Potri.005G182800 [exp]	0	1
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.019G036000 [exp]	3.74	0.9264	TUA8,TUA1.1
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	4.58	0.9337
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.018G119500 [exp]	8.36	0.9214
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	10.39	0.9168
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	10.58	0.9231	Pt-SUS1.1
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.008G180800 [exp]	10.67	0.9025
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	11.74	0.9214
AT1G54530			Calcium-binding EF hand family...		Potri.005G049900 [exp]	12.48	0.8623
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	12.64	0.9201
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	13.22	0.9209

Compare expression of checked genes

Potri.005G182800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.