Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21470 576 / 0 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT5G57440 135 / 2e-37 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 134 / 3e-36 GPP1 glycerol-3-phosphatase 1 (.1) AT4G11570 69 / 1e-12 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G56500 69 / 2e-12 haloacid dehalogenase-like hydrolase family protein (.1) AT2G38740 59 / 7e-10 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 54 / 7e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 52 / 2e-07 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G10970 45 / 6e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT1G79790 43 / 0.0002 AtcpFHy1 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077200 [exp] 691 / 0 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.018G092500 [exp] 138 / 2e-38 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G104366 [exp] 71 / 2e-13 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G127100 [exp] 68 / 2e-12 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G086900 [exp] 67 / 2e-12 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 68 / 5e-12 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G147300 [exp] 65 / 1e-11 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 63 / 5e-11 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G088500 [exp] 61 / 2e-10 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018435 [exp] 590 / 0 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 588 / 0 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 586 / 0 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10006954 [exp] 137 / 1e-37 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10025466 [exp] 129 / 2e-35 AT5G57440 357 / 1e-126 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020699 [exp] 76 / 1e-14 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 73 / 1e-13 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10002002 [exp] 72 / 2e-13 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10035494 [exp] 71 / 2e-13 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10033034 [exp] 67 / 4e-12 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01687 [poplar] [flax] Flavokinase Riboflavin kinase CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G183400.2 pacid=42802893 polypeptide=Potri.005G183400.2.p locus=Potri.005G183400 ID=Potri.005G183400.2.v4.1 annot-version=v4.1 ATGTCGATTGCAAAGCCTTTGAAGAAGGCAGTAGCTGCTGTCATTCTTGATTTGGATGGTACCCTTATTCATACAGATGGCATATTGGGCGATGTTTTAA AAGCTTTATTGCTCAAGTACGGAAAACAATGGGATGGGAGAGAAGCTCAAAAAATAGTGGGGAAGACACCTTTGGAAGAAGCTGCTATAGTGGTGGGAGA TTATGAGCTTCCTTGTTCAATTGATGAATTTGTGACTCAAATCACCCCATTGCTCTACGATCAGTTTTGCAACATTAAAGCTCTTCCTGGTGCCAATCGG TTGATTAAGCATTTGAGTGGTCATAATGTGCCTCTGGCATTGGCTTCAAACTCTCCAAGGGCATATATAGAATCCAAAATTTCTTATCAACAGGGATGGA AGGAATCCTTTTCTGTCATCATCGCTGGTGATGAAGTGAGAGCAGGAAAGCCATCTCCTGAAATATTTTTGGAAGCTGCTAAAAGGCTAAATATTGAACC ATCCCGCTGCCTTGTCATTGAGGATTCTTTGCCAGGTGTTACTGGTGGTAAGGCTGCTGACATGGAAGTAGTTGCCGTACCATCCATTCCAAAACAAACT CATCTTTATATAGCAGCAGATGAAGTGATCAGCTCTCTACTTGATTTACAACCTGAATTGTGGGGCCTCCCTCCATTTGATGATTGGATAGATGGTACTT TGCCATTAGAAATTTGGCACATAGGTGGTCCTGTGGTTAAGGGATTTGGTCGTGGCTCAAAGGTTCTTGGAATCCCTACCGCTAATTTATCTACCAAAGG TTACTCAGCACTTCTTTCGGAACATCCATCTGGTGTGTACTTTGGTTGGGCTGGATTATCAACACGAGGTGTTTACAAGATGGTCATGAGTATTGGTTGG AACCCATATTTCAACAACACTGAAAAGACAATAGAGCCTTGGTTGCTTCATGAATTTGATGGGGATTTCTATGGTGAGGAATTGCGCCTTGTGATAGTTG GCTATATTCGACCAGAGGCCAATTTTACAACACTTGAGAGCTTGATAGCAAAGATTCACGAGGATAGAAGAATTGCAGAGAGAGCTTTAGATATTCCATT ATACCTGAAATACAAGGATGACCCATATTTGAAAGGCTCTTCCCTGTGA
AA sequence Show only first row Show all	>Potri.005G183400.2 pacid=42802893 polypeptide=Potri.005G183400.2.p locus=Potri.005G183400 ID=Potri.005G183400.2.v4.1 annot-version=v4.1 MSIAKPLKKAVAAVILDLDGTLIHTDGILGDVLKALLLKYGKQWDGREAQKIVGKTPLEEAAIVVGDYELPCSIDEFVTQITPLLYDQFCNIKALPGANR LIKHLSGHNVPLALASNSPRAYIESKISYQQGWKESFSVIIAGDEVRAGKPSPEIFLEAAKRLNIEPSRCLVIEDSLPGVTGGKAADMEVVAVPSIPKQT HLYIAADEVISSLLDLQPELWGLPPFDDWIDGTLPLEIWHIGGPVVKGFGRGSKVLGIPTANLSTKGYSALLSEHPSGVYFGWAGLSTRGVYKMVMSIGW NPYFNNTEKTIEPWLLHEFDGDFYGEELRLVIVGYIRPEANFTTLESLIAKIHEDRRIAERALDIPLYLKYKDDPYLKGSSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Potri.005G183400 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.006G282200 [exp]	9.16	0.8953
AT3G14470			NB-ARC domain-containing disea...		Potri.006G272066 [exp]	9.79	0.9140
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Potri.015G087700 [exp]	22.18	0.9006
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	28.46	0.8946	DHQD3
AT5G24810			ABC1 family protein (.1.2)		Potri.006G276600 [exp]	29.93	0.8945
AT2G24280			alpha/beta-Hydrolases superfam...		Potri.018G111000 [exp]	44.15	0.8726
					Potri.010G007844 [exp]	59.51	0.8893
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	66.13	0.8854
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032650 [exp]	66.27	0.8833
AT3G21690			MATE efflux family protein (.1...		Potri.004G016400 [exp]	67.08	0.8613

Compare expression of checked genes

Potri.005G183400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.