Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08455 341 / 3e-119 BTB/POZ domain-containing protein (.1) AT3G56230 80 / 3e-17 BTB/POZ domain-containing protein (.1) AT1G01640 74 / 1e-15 BTB/POZ domain-containing protein (.1.2) AT4G37610 68 / 9e-13 BT5 BTB and TAZ domain protein 5 (.1) AT3G48360 67 / 1e-12 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT2G39760 64 / 2e-11 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT1G21780 60 / 2e-10 BTB/POZ domain-containing protein (.1.2) AT1G55760 59 / 8e-10 BTB/POZ domain-containing protein (.1) AT5G48510 58 / 8e-10 BTB/POZ domain-containing protein (.1) AT5G19330 59 / 1e-09 ARIA ARM repeat protein interacting with ABF2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077000 [exp] 452 / 1e-162 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.013G083800 [exp] 77 / 2e-16 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.005G210000 [exp] 67 / 2e-12 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 65 / 1e-11 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G468700 [exp] 64 / 1e-11 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.012G091400 [exp] 63 / 3e-11 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.010G199200 [exp] 62 / 7e-11 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.015G087700 [exp] 60 / 3e-10 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.008G059600 [exp] 59 / 6e-10 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042763 [exp] 356 / 8e-125 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 348 / 7e-122 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10013670 [exp] 73 / 2e-14 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10041235 [exp] 61 / 7e-11 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 62 / 1e-10 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10008348 [exp] 61 / 2e-10 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 60 / 4e-10 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10042717 [exp] 59 / 1e-09 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10029677 [exp] 59 / 2e-09 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10034070 [exp] 59 / 2e-09 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.005G183600.1 pacid=42803731 polypeptide=Potri.005G183600.1.p locus=Potri.005G183600 ID=Potri.005G183600.1.v4.1 annot-version=v4.1 ATGAGAGGCCACCGCTGTACAGCGTCCTCCCGGGTGGAGACTGAAAGCGATACTGATTCCGATTCCGAAACGATGAGGTGCATTTCTTGTAAGGAGTACT ACGGCAGATGCGATGCTGGAACTTGCAAAGAGTGTTATGAGGAAGCAAGCGAGACCGAAGAAGAGCTTAAAAGAGAGATCGATGATCTCAAAGCTAAAGT TGCCTTCTTGCGTTTCTGGTCTCCTCTCGATCACCACATCACTTACCGCTCCTCTGCTGGCCCTTGTTTCACCGATGTCGTTTTGGTTGCTTCCTCCGAT GATGGACTCACCGGGACTGCGCCATCTGTCCCAGTCCCTGCTCATAAGGCCGTTTTGGTGAGCCGTTCCCCAGTCTTCAAGGCAATGCTTGAGAACGAGA TGGAAGAAAGCCGGAGTGGTACCATCAAGATTAGTGATGTATCATATGATGCACTTCGTACATTTGTCAACTATTTTTACACTGCTGAAGCGTGCCTTGA TGAGCAGATGGCCTATGATCTTTTAATATTGGCCGAAAAATATCAGGTGAAGCATCTCAAGGCTTACTGTGAGAAGTTTTTGGTGTCAAAACTAAACTGG GAAAACTCAGTCGTGAGCTATGCCTTTGCCCATCAGCATAATGCAAAGCATATGCTTGAAGCAGCGTTGTCATTGATCACTGACAACATGGATAAACTTA CCAAGCGAGAGGAGTACATGGAGCTTGTGGAAAAGGATCCCCGGCTTGTCGTGGAGATTTATGAAGCATATCTGTCCAAACAGATTAATACAGCAGCGCA CAAGGATTCCTCTTCCACGAAGCCATAG
AA sequence Show only first row Show all	>Potri.005G183600.1 pacid=42803731 polypeptide=Potri.005G183600.1.p locus=Potri.005G183600 ID=Potri.005G183600.1.v4.1 annot-version=v4.1 MRGHRCTASSRVETESDTDSDSETMRCISCKEYYGRCDAGTCKECYEEASETEEELKREIDDLKAKVAFLRFWSPLDHHITYRSSAGPCFTDVVLVASSD DGLTGTAPSVPVPAHKAVLVSRSPVFKAMLENEMEESRSGTIKISDVSYDALRTFVNYFYTAEACLDEQMAYDLLILAEKYQVKHLKAYCEKFLVSKLNW ENSVVSYAFAHQHNAKHMLEAALSLITDNMDKLTKREEYMELVEKDPRLVVEIYEAYLSKQINTAAHKDSSSTKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08455			BTB/POZ domain-containing prot...		Potri.005G183600 [exp]	0	1
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.010G041000 [exp]	2.44	0.8184
AT1G19310			RING/U-box superfamily protein...		Potri.002G133000 [exp]	3.60	0.8205
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.005G072500 [exp]	6.92	0.7834
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Potri.016G134700 [exp]	7.41	0.8015
AT1G27970		NTF2B	nuclear transport factor 2B (....		Potri.001G057500 [exp]	10.95	0.8030
AT5G50410			unknown protein		Potri.015G096000 [exp]	14.96	0.7125
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	16.24	0.8076
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.001G236700 [exp]	23.66	0.7834	ADF1,Pt-ADF.5
AT2G45260			Plant protein of unknown funct...		Potri.002G145900 [exp]	24.00	0.7646
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.009G087400 [exp]	24.24	0.7274

Compare expression of checked genes

Potri.005G183600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.