Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G01460 67 / 3e-11 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 57 / 1e-08 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT3G08020 55 / 1e-07 PHD finger family protein (.1) AT3G52100 50 / 4e-06 RING/FYVE/PHD-type zinc finger family protein (.1) AT4G29940 50 / 5e-06 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT5G09790 49 / 7e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT1G79350 48 / 2e-05 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G44800 48 / 2e-05 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT1G50620 44 / 0.0002 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G076900 [exp] 838 / 0 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.017G072460 [exp] 64 / 3e-10 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.015G009632 [exp] 55 / 7e-08 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 54 / 1e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.009G059700 [exp] 55 / 2e-07 AT3G08020 748 / 0.0 PHD finger family protein (.1) Potri.009G059500 [exp] 55 / 2e-07 AT3G08020 763 / 0.0 PHD finger family protein (.1) Potri.001G264800 [exp] 52 / 1e-06 AT3G08020 701 / 0.0 PHD finger family protein (.1) Potri.005G058000 [exp] 50 / 3e-06 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G109900 [exp] 50 / 4e-06 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029733 [exp] 424 / 4e-142 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10042764 [exp] 419 / 4e-140 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 347 / 2e-112 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 347 / 4e-107 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030625 [exp] 66 / 9e-11 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 63 / 7e-10 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 62 / 8e-10 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10016404 [exp] 58 / 2e-08 AT3G08020 569 / 0.0 PHD finger family protein (.1) Lus10019715 [exp] 58 / 2e-08 AT3G08020 726 / 0.0 PHD finger family protein (.1) Lus10012522 [exp] 50 / 6e-06 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.005G183700.1 pacid=42802638 polypeptide=Potri.005G183700.1.p locus=Potri.005G183700 ID=Potri.005G183700.1.v4.1 annot-version=v4.1 ATGGTTGGTAAAGAGGGAACAAGCAATGGCGAGGGTGCAAAAGAAAGGGTTCAGCACTTAAATATGGAAGCAATGGACAATGGGTTTGGAAATGATGGTG GTGATGCAAGCTCTGGGGGCAGTGAGGGTTTTCGAACTTACAAGAGACGAAGGAACATGAGGTCAAGTTCGGATAGTAAAGGTCAAGAGGATGGGAAATG TTTTATGGAAGCTGCTAGTAGATTGTCAGACCAGACCATAAAGGATGATGATTCACGAGGCCATCTTTGTGGGAATCATGCTTCTATGAATCGTTTAAAT GATGTTTCACAGAGGCAGTGGAGAAAGTTTGTCCTTGACCACATGTATCAATCATTAAGTAATGATGAAAATGGCATCCAGGGGTGCTTGAGGGGTGCGC TTATGATGGCAGAGTCTGGTTACTGTAATGCAGATAAGTCACCTTTGATGGGGCAGATGGCTAATGGAACTCACAGTACAACTAAAGGGCATGCAGGGGT CTTGTCAAATGGAGCTTTGGATGAATCACGACATCACAGTGTCCCTGAGTTGTGCCAGCATGCTTTCCTTAGTATTTTACTGTCAGAAAAGTTCACCTCT CTCTGTAAGCTACTGTTTGAAAACTTCCAAGGAATGAAGACTGGCAGCATTCTTAGCCTGAGTTTCATAGACAGAAGGATGAAAGACGGAGCTTATGATC ATTCGCCTATGCTTTTCTGTGAAGATATTGAGCAGTTCTGGAGAAAGCTTCAAGGTTTTGGTGCTGAATTAATCTCTCTTTCAAAGAGCCTATCAGACAT ATCAAAGACTTGCTGTAATGAACGGGTGGGAGGATCAGTACGCTGTATATTTGAAGATGAAAAGCATGGGTTCTGCATCAAGGGTTCTGATTCTCATGGT CAACCAGAGCAAAAGGATGCTTGTTGTGTCTACAGAGTCTGCAGTTGTAGGCGTTGTGGGGAAAAGGCAGATGGGAGAGATTGTTTAGTTTGTGATTCAT GTGAGGAAATGTACCATGTCTCCTGTATTGAGCCTGCTGTCAAAGAGATTCCCCCCAAAAGCTGGTACTGTGACAACTGCGCTGCAAGTGGTATGGGATC CATTCATGAGAATTGTGTAGCGTGTGAGAGGCTGAATTGCCCCAGGACCCAAATTAATCAAGCTGGTGATGAAATTGGTTTATCAACTCAAGAACCATTC AATGATTTTGAAGAGGCATCAAATTTCAGCACGAATAATGAGGTTCAGCTATCATCAGAAGGGACTGAAAACATACGCATCTGTAAAATTTGTGGAAGTC CAGTGAGCAATGGAGAGAAGATAAATATATGTGATCACTCTGAATGCCCTGGCAAGTACTACCATGTGAGATGCTTGACAAATAGGCAGTTAATATTGTA TGGCCCTCGTTGGTATTGCCCTTCTTGTTTATGCAGAGGTTGCCTCACTGATAAAGACGATGATAAGATTGTTTTATGTGATGGCTGTGATCATGCATAC CACCTTTATTGCATGATTCCGCCACGCATTTCTGTACCTAAAGGGAAATGGTTTTGCAGGCGATGTGATCTGAAAATACAGAAATTACGCAGGGTAAGGA GGGCATATGAGAAATCCGAAAGGTATGTGAAAAAGAAGGGTGAAGGGGTTAAAAAGGAATGTGAAAACCGCAAGAAACTGTACAAGGAAGGTGGAGAAGA ATCAGATAAAGGTAGAGAAGGAATGGACATGCTTGTAACTGCAGCACTAAAGTGTGAAGTCGGCTGCCAATCAATTGAAGAGTTGAAAAGCACATGA
AA sequence Show only first row Show all	>Potri.005G183700.1 pacid=42802638 polypeptide=Potri.005G183700.1.p locus=Potri.005G183700 ID=Potri.005G183700.1.v4.1 annot-version=v4.1 MVGKEGTSNGEGAKERVQHLNMEAMDNGFGNDGGDASSGGSEGFRTYKRRRNMRSSSDSKGQEDGKCFMEAASRLSDQTIKDDDSRGHLCGNHASMNRLN DVSQRQWRKFVLDHMYQSLSNDENGIQGCLRGALMMAESGYCNADKSPLMGQMANGTHSTTKGHAGVLSNGALDESRHHSVPELCQHAFLSILLSEKFTS LCKLLFENFQGMKTGSILSLSFIDRRMKDGAYDHSPMLFCEDIEQFWRKLQGFGAELISLSKSLSDISKTCCNERVGGSVRCIFEDEKHGFCIKGSDSHG QPEQKDACCVYRVCSCRRCGEKADGRDCLVCDSCEEMYHVSCIEPAVKEIPPKSWYCDNCAASGMGSIHENCVACERLNCPRTQINQAGDEIGLSTQEPF NDFEEASNFSTNNEVQLSSEGTENIRICKICGSPVSNGEKINICDHSECPGKYYHVRCLTNRQLILYGPRWYCPSCLCRGCLTDKDDDKIVLCDGCDHAY HLYCMIPPRISVPKGKWFCRRCDLKIQKLRRVRRAYEKSERYVKKKGEGVKKECENRKKLYKEGGEESDKGREGMDMLVTAALKCEVGCQSIEELKST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.005G183700 [exp]	0	1
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	5.65	0.7918
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G056000 [exp]	10.48	0.7202
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	20.49	0.7087	Pt-UBP27.1
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	21.90	0.6727
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.003G062700 [exp]	22.27	0.7028
					Potri.017G112500 [exp]	26.19	0.6498
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	27.23	0.7050
AT5G43822			Pentatricopeptide repeat (PPR)...		Potri.005G253200 [exp]	27.83	0.6896
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.005G053200 [exp]	28.56	0.7021	Pt-BZO2.3
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.015G092100 [exp]	30.59	0.6987

Compare expression of checked genes

Potri.005G183700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.