Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51810 383 / 9e-133 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT5G07200 375 / 2e-129 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT4G25420 369 / 5e-127 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G44090 366 / 5e-126 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT1G60980 355 / 8e-122 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT4G21200 169 / 1e-49 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT3G19010 167 / 1e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G05600 166 / 3e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 164 / 4e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G21420 155 / 3e-44 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184400 [exp] 508 / 0 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.007G103800 [exp] 477 / 1e-169 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 470 / 6e-167 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.015G134600 [exp] 380 / 1e-131 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 379 / 6e-131 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 373 / 7e-129 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 356 / 5e-122 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 170 / 6e-50 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 168 / 5e-49 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 375 / 2e-129 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 373 / 5e-128 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10015016 [exp] 369 / 2e-127 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006350 [exp] 367 / 2e-126 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 364 / 3e-125 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10041390 [exp] 354 / 3e-121 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10036539 [exp] 350 / 7e-120 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10032930 [exp] 167 / 7e-49 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030934 [exp] 164 / 2e-47 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10015573 [exp] 162 / 5e-47 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G184200.1 pacid=42805255 polypeptide=Potri.005G184200.1.p locus=Potri.005G184200 ID=Potri.005G184200.1.v4.1 annot-version=v4.1 ATGCCAAGAAGATTTGTTTGGCCAAAACAAGACTTAGTTGGTGCTCATCAAGAGCTCACGGAGCCAGTCGTGGACCTTGAGGGTTTCTTTAGAGGTGACG AGGAGGCAATAAAGCAGGCTTCTGATATCATTAAGGCTGCTTGCTTGCAACATGGTTTTTTCCAAGTGATCAATCATGGAGTTGATCTCAATCTCATTAG TCTCGCCCATGATCACATGCATAATTTCTTTAAGCTTCCAACTTGCGATAAACTAAGGGTTCGGAGGATGCCAGGTAGCATTTGGGGGTATTCTAGTGGA CATGCTGATCGGTATTTGTCTAAATTGCCATGGAAAGAGACGTTATCTTTTGGCTACAATGAAAACTGTCCGAATCCTATCGGGATAGACTTTTTCAAGT CTACCTTAGGGAAGGATTTTGAACAAACAGGCTTGGTCTATCTAAAATATTGTGAGGCTATGAAGGGTTTGTCCCTCTCCATAATGGAACTATTGGCAAT CAGCTTGGGAGTTGATCGAGGGTATTACAAAAGTTTTTTTGAAGATGGTTGCTCTATAATGAGATGTAACTTCTACCCTCCTTGTCAAGAGCCAGGTCTT ATTCTAGGCACTGGACCTCATCGTGATCCCACATCGCTAACCATACTTCACCAAGATCAAGTCGGAGGTCTAGAAGTTTTTTCAGACAACGTATGGCAGA CGGTTCGTCCCCGTCAAAGTGCCCTTGTTATTAACATTGGCGATACCTTTATGGCCTTATCGAATGGGACCTACAAGAGCTGCCTGCACAGGGCTGTGGT CAACAAGTACGAGGAGAGGAGATCGTTGGCATTCTTTCTTTGCCCAAAAGAAGACAAGGTGGTGAGACCACCACTGGATCTTGTGTGCAATCAAGGGAGA AGGATGTACCCAGACTTTACATGGTCGGATTTGCTCCATTTCACACAGAAGTACTACAGAGCTGATGATGCTACCCTTCAGAACTTCACCAAATGGATCA TTTCTCCAAAATCAGCAAGCCTCTAA
AA sequence Show only first row Show all	>Potri.005G184200.1 pacid=42805255 polypeptide=Potri.005G184200.1.p locus=Potri.005G184200 ID=Potri.005G184200.1.v4.1 annot-version=v4.1 MPRRFVWPKQDLVGAHQELTEPVVDLEGFFRGDEEAIKQASDIIKAACLQHGFFQVINHGVDLNLISLAHDHMHNFFKLPTCDKLRVRRMPGSIWGYSSG HADRYLSKLPWKETLSFGYNENCPNPIGIDFFKSTLGKDFEQTGLVYLKYCEAMKGLSLSIMELLAISLGVDRGYYKSFFEDGCSIMRCNFYPPCQEPGL ILGTGPHRDPTSLTILHQDQVGGLEVFSDNVWQTVRPRQSALVINIGDTFMALSNGTYKSCLHRAVVNKYEERRSLAFFLCPKEDKVVRPPLDLVCNQGR RMYPDFTWSDLLHFTQKYYRADDATLQNFTKWIISPKSASL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G184200 [exp]	0	1
					Potri.014G107050 [exp]	1.41	0.7302
					Potri.016G115650 [exp]	10.34	0.7433
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084100 [exp]	16.09	0.6692
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	39.49	0.6554
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	60.22	0.6318
					Potri.005G161366 [exp]	95.33	0.6148

Compare expression of checked genes

Potri.005G184200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.