Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA20ox3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51810 380 / 3e-131 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 370 / 2e-127 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 366 / 1e-125 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G44090 355 / 2e-121 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT1G60980 355 / 3e-121 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT3G19010 176 / 6e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G11180 176 / 2e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 167 / 3e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G21200 161 / 2e-46 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT3G21420 157 / 2e-44 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184200 [exp] 508 / 0 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 472 / 3e-167 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.007G103800 [exp] 468 / 6e-166 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.015G134600 [exp] 401 / 2e-139 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 399 / 2e-138 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 387 / 6e-134 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 367 / 6e-126 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 165 / 9e-48 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033600 [exp] 164 / 1e-47 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 388 / 4e-134 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 384 / 3e-132 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10006350 [exp] 367 / 6e-126 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 365 / 4e-125 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10015016 [exp] 364 / 6e-125 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041390 [exp] 362 / 5e-124 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10036539 [exp] 359 / 8e-123 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10030934 [exp] 166 / 5e-48 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10030995 [exp] 165 / 2e-47 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10011476 [exp] 162 / 2e-46 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G184400.1 pacid=42804510 polypeptide=Potri.005G184400.1.p locus=Potri.005G184400 ID=Potri.005G184400.1.v4.1 annot-version=v4.1 ATGGATTCTCCCCTAAAATTACAAGAGCAAAGCAAGGGTTTTTTATTTGACTCAGTGTTGCACAAACAAGCTGGTTTTCCCAAAGAATTTCTTTGGCCAG ACTTGGTTAGGGCTCAACAAGAGCTCTCGGAGCCACTGGTGGACCTGGAGGGGTTCTTCAAAGGGGATGAGGAGGCAACAAAACAGGCTGCTAATATAAT CAAGGATGCATGCTCGAGGCATGGTTTCTTTCAAGTGATCAATCATGGAGTAGATCCCAATGTTATTAGAGACGCAGAGGATTACATGGACCATTTCTTC AGGCTTCCAGTTTCCGAGAAACTTAAGGCTCGGAGGATGCCAGGCAGCTTGTGTGGTTATTCTGGTGCTCATGCTGATCGGTATGCATCAAAACTTCCAT GGAAAGAGACACTCTCTTTTCGTTACCATGAAAATTCTTCGGATCTCGTTGTGCTAGATTTCTTCAAATCTGCTCTTGGGAATGATTTTGAGCAAACAGG AATGGTATATCAAAAATATTGTGAAGCTATGATGGATTTATCCTTCGCCATATTGGAACTACTGGCAATCAGCCTGGGAGTTGATCGAAAACTTTACAGA AAATTCTTTGAAGATGGTTTCTCGATATTGAGATGTAACTTCTACCCTCCTTGTCAAGAGCCTGGAAATACTCTTGGCACGGGACCCCATTGCGATTCAA ATTCAATAACCATACTTCACCAAGATCAGGTTGGAGGCTTAGAAATTTTCACAAACAACGTATGGCAGACAATTCCACCCCTTCAAGGTGCACTCATCAT CAATATTGGTGATACCTTCACGGCATTATCCAATGGGAAATACAAGAGTTGCTTGCATCGGGCGATGGTTAACAAGCATGAGCAGAGGAAATCTTTGGCA TTCTTTCTCAGTCCAAGAGAAGACAAGGTGGTGAGACCACCACAAGAGCTTGTGTGCAGTGAAGGGAAAAGGATGTATCCAGACTTCACATGGTTGAATT TGTCTCGATTCGTACAAAATCACTATAGAGCTGATGATAGCACACTTCAAAACTTCACCAACTGGTCCCAATCAGTAAATCTCTAG
AA sequence Show only first row Show all	>Potri.005G184400.1 pacid=42804510 polypeptide=Potri.005G184400.1.p locus=Potri.005G184400 ID=Potri.005G184400.1.v4.1 annot-version=v4.1 MDSPLKLQEQSKGFLFDSVLHKQAGFPKEFLWPDLVRAQQELSEPLVDLEGFFKGDEEATKQAANIIKDACSRHGFFQVINHGVDPNVIRDAEDYMDHFF RLPVSEKLKARRMPGSLCGYSGAHADRYASKLPWKETLSFRYHENSSDLVVLDFFKSALGNDFEQTGMVYQKYCEAMMDLSFAILELLAISLGVDRKLYR KFFEDGFSILRCNFYPPCQEPGNTLGTGPHCDSNSITILHQDQVGGLEIFTNNVWQTIPPLQGALIINIGDTFTALSNGKYKSCLHRAMVNKHEQRKSLA FFLSPREDKVVRPPQELVCSEGKRMYPDFTWLNLSRFVQNHYRADDSTLQNFTNWSQSVNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G184400 [exp]	0	1	GA20ox3
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.002G238600 [exp]	5.09	0.8547
AT1G08390			unknown protein		Potri.004G190200 [exp]	13.26	0.8161
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	14.42	0.8341
AT4G33870			Peroxidase superfamily protein...		Potri.003G053700 [exp]	15.23	0.8540
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G437950 [exp]	18.65	0.7700
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Potri.014G131600 [exp]	19.51	0.8466
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.007G080300 [exp]	20.49	0.7800
AT1G15780			unknown protein		Potri.003G026510 [exp]	20.78	0.8385
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	27.56	0.8183
AT1G55210			Disease resistance-responsive ...		Potri.003G216200 [exp]	29.12	0.7946

Compare expression of checked genes

Potri.005G184400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.