Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29470 1050 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 1041 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 1007 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 884 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 612 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 592 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 562 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 502 / 6e-168 Putative methyltransferase family protein (.1) AT1G77260 499 / 4e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 498 / 5e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075800 [exp] 1370 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 1043 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 987 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 905 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 880 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 627 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 579 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 502 / 4e-168 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 494 / 4e-165 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042767 [exp] 1136 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 1108 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 1097 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 1084 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 909 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 880 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 849 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 833 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 829 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 826 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G184500.4 pacid=42804880 polypeptide=Potri.005G184500.4.p locus=Potri.005G184500 ID=Potri.005G184500.4.v4.1 annot-version=v4.1 ATGGCTATGGGAAAATATTCCCGTGTTGATGGGAAGAAGTCATCCAACTACTGTTCTACAATCACTGTGGTTGTGTTTGTTGCTTTGTGTTTAGTTGGGG CTTGGATGTTTATGTCATCATCTGTTTCAGTTCAAAATTCAGACTCGTCTTCCCAAGAGAAAGTGAATGATGTGAAACGAGTGGCTGGCGAAAATAATTC TAAGCAATTTGAAGACAGTCCTGGTGATTTACCGGATGATGCAACCAAAGAAGATGGGAACACTGTTGATTCTCAAAGTGATAGCCAATCTGATGTCCAT GAAGACCAAAATGTGACTGAAAAAGAGAGTGAAGGTACAGTTGAGGATAACAAGGATGAGAAGACTGAGTCTAAGAATATGGTTGAAGAAAACCAGGATG AGAAGACTGAGTCTAAGAATATGGTTGAAGAAAACCAGGATGAGAAGACTGAATCTCAAGAGGAACCAAAGACAGAGACTGAAAAGGATGGAAAAACAGA GGATAGAGGGTCAAATTCAGGAGATGGAGAATCAAATTCAGAAGCTGGAGAGATGCCAGCTCAAGGTGATGAAACAAATAAAAGCGAGCAAACAGAATCA GAGGAGAGCTCAGGTGAAAATAAATCCGAGTTGGACGAGGGGGAGAAAAACTCAGACTCAGGAGAGAGTGCAAATGAAAATAACCAGGATGGTGCTACTG AGAATAACGTGGATAGTCAAGAGAATGATCAAACTTCCATTGAGATTTTACCTGCCGGTGCACAATCAGAACTTCTAAATGAAACTAATACTCAAAATGG GGCTTGGTCAACTCAAGTGGTGGAGTCACAGAAAGAGAAGATATCGCAACAATCTTCAATATCTAAGGATCAAAATGGTCATGCATGGAAACTTTGTAAT GTCACTGCTGGACCAGATTACGTCCCTTGCCTTGATAATTGGTATGTTATAAGAAGGCTTTCAAGCACAAAGCACTATGAACATCGAGAGAGGCACTGCC CTCAAGAAGCCCCCACTTGTCTGGTATCCATACCTGAAGGATATCGACGCTCAATTAAGTGGCCTAAAAGCAAGGATAAGATATGGTACTATAATGTTCC CCACACCAAGCTTGCTGAGGTTAAGGGACATCAGAATTGGGTTAAACTTACTGGTGAATATCTGACTTTTCCTGGTGGTGGAACTCAGTTCAAGCACGGT GCTCTTCATTATATTGATTTCATCCAGGATTCACATCCTGATATTGCATGGGGGAAAAGAACCAGAGTGATATTGGATGTTGGGTGTGGGGTGGCAAGCT TTGGAGGTTATCTTTTTGAAAGAGATGTTCTCGCAATGTCATTTGCTCCCAAGGATGAACATGAAGCTCAGGTTCAATTTGCACTTGAAAGGGGAATCCC TGCAATGTTGGCTGTTATGGGCACCAAGAGATTACCCTTTCCTAGTTCTGTTTTTGATGTTGTTCACTGCGCACGCTGTAGGGTTCCTTGGCATGTTGAA GGTGGTAAACTTCTTTTGGAGCTGAATCGAGTTTTGCGACCTGGTGGTTACTTTGTCTGGTCTGCCACCCCAGTTTATCAAAAGCTTCCAGAAGATGTGG GCATTTGGAAAGCCATGTCCAAACTAACAAAGTCAATGTGCTGGGATCTGGTGGTGATTAAAAAGGACAAACTAAATGGTGTTGGTGCTGCAATATTTAG AAAACCAACTTCCAATGACTGTTATAATAATAGACCCCAAAATGAGCCTCCACTGTGCAAAGAATCTGATGATCCAAATGCAGCATGGAATGTCCCACTT GAGGCATGCATGCATAAAGTGCCTGAAGATGCATCAGTGCGTGGGTCTCGATGGCCTGAGCAATGGCCACAAAGGCTGGAGAAACCACCGTACTGGCTGA ATTCTCAGGTTGGAGTTTATGGTAAAGCTGCGCCAGAGGATTTTGCTGCTGACTATGGCCACTGGAAAAATGTTGTTTCCAAATCTTATTTGAATGGAAT GGGAATCAACTGGTCTTCTGTAAGAAATATCATGGACATGAGAGCTGTATATGGAGGGTTTGCTGCGGCACTGAAAGATTTGAAAGTGTGGGTTATGAAT GTAGTCCCAATTGACTCTGCAGACACGCTTCCAATAATTTACGAGCGTGGTTTATTTGGAATGTATCATGATTGGTGCGAATCATTCAACACCTATCCTA GAACTTACGATCTTCTCCATGCCGATCATCTCTTTTCCAGTCTCACAAAGAGGTGCAACTTAGTGGCAGTAATAGCAGAAGTTGACAGGATACTGAGGCC AGAAGGAAATCTGATCGTGCGTGACAATGTTGAAATCATTGGTGAGATTGAGAGCCTGGCCAAATCTCTGAACTGGGATATCCGGATGATTTACTCAAAA GACAATGAGGGACTGATTTGTGTTCACAAGACAATGTGGCGTCCTACAGAGCCAGAAACAATAACGTCAGCCATTATATAA
AA sequence Show only first row Show all	>Potri.005G184500.4 pacid=42804880 polypeptide=Potri.005G184500.4.p locus=Potri.005G184500 ID=Potri.005G184500.4.v4.1 annot-version=v4.1 MAMGKYSRVDGKKSSNYCSTITVVVFVALCLVGAWMFMSSSVSVQNSDSSSQEKVNDVKRVAGENNSKQFEDSPGDLPDDATKEDGNTVDSQSDSQSDVH EDQNVTEKESEGTVEDNKDEKTESKNMVEENQDEKTESKNMVEENQDEKTESQEEPKTETEKDGKTEDRGSNSGDGESNSEAGEMPAQGDETNKSEQTES EESSGENKSELDEGEKNSDSGESANENNQDGATENNVDSQENDQTSIEILPAGAQSELLNETNTQNGAWSTQVVESQKEKISQQSSISKDQNGHAWKLCN VTAGPDYVPCLDNWYVIRRLSSTKHYEHRERHCPQEAPTCLVSIPEGYRRSIKWPKSKDKIWYYNVPHTKLAEVKGHQNWVKLTGEYLTFPGGGTQFKHG ALHYIDFIQDSHPDIAWGKRTRVILDVGCGVASFGGYLFERDVLAMSFAPKDEHEAQVQFALERGIPAMLAVMGTKRLPFPSSVFDVVHCARCRVPWHVE GGKLLLELNRVLRPGGYFVWSATPVYQKLPEDVGIWKAMSKLTKSMCWDLVVIKKDKLNGVGAAIFRKPTSNDCYNNRPQNEPPLCKESDDPNAAWNVPL EACMHKVPEDASVRGSRWPEQWPQRLEKPPYWLNSQVGVYGKAAPEDFAADYGHWKNVVSKSYLNGMGINWSSVRNIMDMRAVYGGFAAALKDLKVWVMN VVPIDSADTLPIIYERGLFGMYHDWCESFNTYPRTYDLLHADHLFSSLTKRCNLVAVIAEVDRILRPEGNLIVRDNVEIIGEIESLAKSLNWDIRMIYSK DNEGLICVHKTMWRPTEPETITSAII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	4.89	0.7465
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Potri.013G025100 [exp]	5.09	0.6461	Pt-CAX11.1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.005G247700 [exp]	6.48	0.7394
					Potri.010G001200 [exp]	9.16	0.7373
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	10.95	0.7063
AT4G24630			DHHC-type zinc finger family p...		Potri.002G065500 [exp]	11.48	0.6884
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	12.24	0.6998
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	12.96	0.6118
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	14.66	0.7291
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	15.29	0.7384	Pt-ATCSLC12.1

Compare expression of checked genes

Potri.005G184500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.