Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44000 279 / 6e-95 unknown protein AT4G11910 190 / 7e-60 SGR2, STAY-GREEN2 unknown protein AT4G22920 186 / 2e-58 ATNYE1, SGR1, STAY-GREEN1 non-yellowing 1 (.1) AT4G11911 172 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075700 [exp] 396 / 2e-141 AT1G44000 259 / 2e-87 unknown protein Potri.003G119600 [exp] 196 / 3e-62 AT4G22920 352 / 4e-123 non-yellowing 1 (.1) Potri.001G112600 [exp] 191 / 2e-60 AT4G22920 336 / 7e-117 non-yellowing 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029738 [exp] 295 / 4e-101 AT1G44000 269 / 1e-90 unknown protein Lus10042769 [exp] 276 / 3e-94 AT1G44000 247 / 2e-82 unknown protein Lus10001194 [exp] 190 / 2e-59 AT4G22920 350 / 7e-122 non-yellowing 1 (.1) Lus10024484 [exp] 188 / 1e-58 AT4G22920 340 / 4e-118 non-yellowing 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12638 [poplar] [flax] Staygreen Staygreen protein
Representative CDS sequence Show only first row Show all	>Potri.005G184700.1 pacid=42805236 polypeptide=Potri.005G184700.1.p locus=Potri.005G184700 ID=Potri.005G184700.1.v4.1 annot-version=v4.1 ATGGCCTGTCATTGTGCTCACTACTCATTTTCACCATCACCACCACACAGGCAATCTTTATCCATCAACAACAGCAATAACAGCACCAAGTTATCATTTA AAGGATCCAAGCCTGCTGTTCTTTCCTCCTTTGGCAATAGCAGGGCTTCCTGTAATACGTTAGTCTCTGAGGCAGTTAGACTTTTGGGTCCTCCGGCAAA ATTTGAAGCTTCAAAGCTGAAAGTAGTCTTAATGGGCGAAGAGATGAATCAATACTCTGCAATTATCCCTCGAACTTACATCCTGTCTCATTGTGACTTC ACAGCAGACCTAACCTTAACAATCTCCAATGTCATCAACCTAGATCAGCTAAGAGGTTGGTATAGCAAGGATGATGTGGTTGCTGAATGGAAAAAGCTAG AAGGACACTTAGCTCTACTTGTCCATTGCTATGTGAGCGGACCCAATCTCATGCTAGACCTTGCTGCTGAGTTCAGATACCACATATTCTCCAAGGAAAT GCCTTTGGTACTTGAAGCTGTGTTGCATGGAGATTCGGCACTTTTCACAGAGCATCCTGAGCTAAAGGATTCTTTAGTTTGGGTGTATTTTCATTCTAGC TCACCCAAGTACAACCGGTTAGAGTGTTGGGGGCCACTCAAGGATGCTGCTCAGGGGCGACCAGGGGATCATCGAGGTTCTTTTACCTGTCCTTCGAGAA AGTGGGGAGGACCAAAGTCCATTTTCCAAGCTCTTTTTGCCTTCCTTCTTTGA
AA sequence Show only first row Show all	>Potri.005G184700.1 pacid=42805236 polypeptide=Potri.005G184700.1.p locus=Potri.005G184700 ID=Potri.005G184700.1.v4.1 annot-version=v4.1 MACHCAHYSFSPSPPHRQSLSINNSNNSTKLSFKGSKPAVLSSFGNSRASCNTLVSEAVRLLGPPAKFEASKLKVVLMGEEMNQYSAIIPRTYILSHCDF TADLTLTISNVINLDQLRGWYSKDDVVAEWKKLEGHLALLVHCYVSGPNLMLDLAAEFRYHIFSKEMPLVLEAVLHGDSALFTEHPELKDSLVWVYFHSS SPKYNRLECWGPLKDAAQGRPGDHRGSFTCPSRKWGGPKSIFQALFAFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44000			unknown protein		Potri.005G184700 [exp]	0	1
AT1G72030			Acyl-CoA N-acyltransferases (N...		Potri.005G054600 [exp]	1.41	0.9686
AT3G29240			Protein of unknown function (D...		Potri.004G125800 [exp]	4.47	0.9566
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G218200 [exp]	5.19	0.9581	Pt-AUX22.4
AT1G30760			FAD-binding Berberine family p...		Potri.011G158600 [exp]	7.41	0.9439
					Potri.003G082300 [exp]	8.71	0.9598
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.015G099900 [exp]	9.53	0.9542
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	9.59	0.9566
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.012G130600 [exp]	22.24	0.9512
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G035500 [exp]	22.27	0.9362	Pt-GST30.1
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.007G093000 [exp]	23.36	0.9279

Compare expression of checked genes

Potri.005G184700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.