Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 147 / 6e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 140 / 1e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 139 / 4e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 136 / 4e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 134 / 3e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 129 / 1e-34 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 125 / 5e-33 ATSRG1, SRG1 senescence-related gene 1 (.1) AT3G11180 125 / 1e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 121 / 3e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G77330 120 / 3e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048900 [exp] 248 / 2e-79 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 245 / 1e-78 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G049000 [exp] 182 / 9e-55 AT2G36690 209 / 5e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 166 / 3e-48 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 163 / 2e-47 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 162 / 8e-47 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 160 / 3e-46 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 160 / 3e-46 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 158 / 5e-45 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018950 [exp] 410 / 4e-144 AT3G60290 147 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10018949 [exp] 402 / 7e-141 AT2G44800 148 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001460 [exp] 370 / 2e-128 AT2G36690 149 / 7e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001711 [exp] 164 / 1e-48 AT2G36690 204 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011263 [exp] 158 / 3e-47 AT4G25420 50 / 2e-07 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 161 / 3e-46 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 152 / 7e-43 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 151 / 1e-42 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 141 / 4e-39 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011979 [exp] 141 / 8e-39 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G185000.1 pacid=42803958 polypeptide=Potri.005G185000.1.p locus=Potri.005G185000 ID=Potri.005G185000.1.v4.1 annot-version=v4.1 ATGGCTCAAACATCTCCAGTGCATACCCACGAGACTTGTGAACACACCAACATAACCTCTGTCCCCTTCTCCAACATCAATATTCCCATGGACTCCGTTT TGGCAGTCGATGAAGATATCCCAACCATCGACTTCCTCATGCTTTTCTCTGATGATCCCATCCAACAATCCAAGGCCCTCGACAATCTAAGCAACGCATG TGACGAGTACGGATTCTTCTATCTGGTAAATCATGGCGTCCCCGATAGTGTGATTGAAGGTGCATTGGAGGGAATTGCTGATTTCTTTGAAGTGACGAAG GAGGAGGAGAGGAAGGAGTACGTGAAAAGTAGCCCAGCAGATAGGATCATGTGGGGTTTAAATTCCCATGCTGGGGAAAATAGGGAATATCTCAAGGTGG TAGCGCATCCCCAATTCCATTGCCCTGCTAAACCAGCTAGCCTCAGTGAGGCCCTAGAAGAGTACTTCAAGAGATTTCAAGATGTTAAAATTGGTTTGGC GAGGGCGATATCCAAGATCTTGGGACTTGAAGAGTTTTACATCGAGAAGTTCTTCAATCTGAAGTCAGGATTTGATGTATCTGCCATGAATGTCTATCCA CCCAATTTCCAGTCAAAAGGTTCTATTGGAGTGCCTTCGCATACCGACCCTGGCTTTTTTGTTTCTCTCATACAAGATGTGAATGGCGGTCTCCGAGTGC TATCGCACAAAGGGAAGTGGATCAACGTATATATACCTCGTAATGCCTTCCTAATTCAAATCGGAGATCATCTGGAGGTTCTAACCAATGGCAAGTATAA GAGTCATATTCATCAGGTAGTGGTGGACAACAACAAGGTCAGGAGAATCTCTCTTGCCACACTTCATGGACCATCTCTAGACACCTTTGTGATTCCGGCA ACAAAGTTTGTGGATCATTTTCACCCATTGGGCTACCGAGGGATGACGTACAAGGAATCCTTGGAGGCCAATGGCCATCACGAGATTGAAGTTCAATCAT GCCTTGAACAACTTAGGCTATGA
AA sequence Show only first row Show all	>Potri.005G185000.1 pacid=42803958 polypeptide=Potri.005G185000.1.p locus=Potri.005G185000 ID=Potri.005G185000.1.v4.1 annot-version=v4.1 MAQTSPVHTHETCEHTNITSVPFSNINIPMDSVLAVDEDIPTIDFLMLFSDDPIQQSKALDNLSNACDEYGFFYLVNHGVPDSVIEGALEGIADFFEVTK EEERKEYVKSSPADRIMWGLNSHAGENREYLKVVAHPQFHCPAKPASLSEALEEYFKRFQDVKIGLARAISKILGLEEFYIEKFFNLKSGFDVSAMNVYP PNFQSKGSIGVPSHTDPGFFVSLIQDVNGGLRVLSHKGKWINVYIPRNAFLIQIGDHLEVLTNGKYKSHIHQVVVDNNKVRRISLATLHGPSLDTFVIPA TKFVDHFHPLGYRGMTYKESLEANGHHEIEVQSCLEQLRL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.005G185000 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G118500 [exp]	1.41	0.9882
AT3G53830			Regulator of chromosome conden...		Potri.006G089901 [exp]	2.44	0.9845
					Potri.014G063350 [exp]	5.00	0.9534
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143133 [exp]	6.00	0.9354
					Potri.002G021200 [exp]	7.48	0.9605
					Potri.016G103700 [exp]	11.35	0.8734
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074850 [exp]	14.24	0.8930
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.010G159900 [exp]	15.23	0.9358	HIUHASE.2
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G098400 [exp]	15.49	0.9297
					Potri.005G193901 [exp]	16.24	0.8719

Compare expression of checked genes

Potri.005G185000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.