Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43980 634 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 409 / 3e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 360 / 2e-114 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 337 / 3e-106 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G02010 334 / 4e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 323 / 2e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49710 320 / 1e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 319 / 1e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 316 / 1e-98 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 317 / 1e-97 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 376 / 6e-121 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 379 / 9e-120 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 362 / 4e-116 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 358 / 9e-114 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G021700 [exp] 352 / 5e-112 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 347 / 1e-110 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 355 / 3e-110 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 346 / 1e-108 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G075200 [exp] 342 / 1e-108 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018945 [exp] 736 / 0 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10028647 [exp] 605 / 0 AT1G43980 459 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 370 / 1e-118 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 360 / 5e-116 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 359 / 6e-110 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 358 / 1e-109 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015414 [exp] 347 / 9e-108 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 337 / 2e-106 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 341 / 2e-105 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 332 / 1e-103 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.005G185300.1 pacid=42804870 polypeptide=Potri.005G185301.1.p locus=Potri.005G185300 ID=Potri.005G185300.1.v4.1 annot-version=v4.1 ATGTACCCTTTAATAAAGCAATGTCATAGAGTTTCAAGAACCTCACTTTCATATTACTCCTACCTCATAGACCACTGTTTCTCATTGAAGTCTTTGAGTT TTGCAAGAATTACTCATGCCCAGTTGATAAAAGTGGGGTTAAATAGACATACTTTTCTAGGTAATCGGTGCCTTGATTTGTACTCTCAGTTTGGCAATGT TAATGATGCTTTGAAAGTGTTTGATGATATAAGTAGCAAGAATATTGTATCCTGGAATATTTGCTTGAAGGGGTTGTTGAAGTTTGATAATTTGAGTTTG GCATGTTCCGTGTTCGATGATATGCCTGAACGAGATGTTGTTAGTTGGAATTCTATGATTTCAGGCTATGCTTCACGTGGGTATTTTGATTGTGCATTGG AAACTTTTTGGGAAATGCAAAAGTTGGGTGTGAGACCAAGTGAGTTCACGTACTCAATTCTAATGTCTGTGGTGTTTGGGGTTCGACATGGAAAGGAAAT TCATGGTAGCATTGTTCGGAGTGGTTTGGGTGCATTGAATGTGGTGCTCGGGAATTCTTTAATTGACATGTATGGGAAGTTTAGTTCTTTAGATTATGCT CTTGGGGTGTTTTTGACAATGGAAGAGTTAGATGTTATCTCTTGGAATTCGTTGATTTCGGTATGTTGTCAATCAGGATATCCAGAGCTGGCATTGGATA AGTTTTGTATAATGAGATCCTTAGGGTATTCACCTGATGAGTTTTCAGTTTCTGTAGTGATCACTTCCTGTTTGAATTTGCGAAATTTGGAGAAGGGTAA GCAGATTTTTGCTCTGTGTGTCAAAGTGGGATTTCTTTGTAATACCATTATATCCAGTGCCACAATTGACCTGTTTTCCAAATGCAACAGATTGGAGGAT TCAGTTCGGCTTTTTGAAGAGCAAGATCAATGGGATTCTGCAGTTTGCAATTCCATGATTTCAAGCTATGCACGGTGTGGCTTTCGTGAGGATGGTCTCC GACTTTTTGTGCTAACCTTGAAGAAGGATATTAGGCCTACTGAGTTCACACTAAGCAGTGTTCTACACTCCACTTCCATTCTTAAGTTGGAGCAAGGAAC TCAGTTCCATTCCTTGGCTGTGAAATCAGGTTTGGAGTTGGATGCTATTGTTGCCAGCTCGCTGGTGGAGATGTACAGCAAATTTGGTTTCATTGACTGT TCTATAAAAATCTTTAATAAGATGGTTGCAAGAGATTTGATAGCCTGGAATACCATGATTATGGGTTTGACTCACAATGGTAGGGTTTTCGAGGCCCTGC AAACCTTTAAGGAACTAATTAGGACAGGTCTGCCACCAGATAGAATAACACTAGCTGGAGTTCTGTTAGCCTGCAGCTTTGGGGGTTTTATCAGTGAAGG AATGACCGTATTTTCATCCATGGAGGAAAGGTACGGGGTGAAACCTAGCAATGAGCATTATGCTTGCTTTGTGGACTTGTTGTGTCAAGCTGGTAGGCTT GATGAAGCATTATATGTTGCAGAATCAATGCCTTATGAGCCTGTTTCTTTAATCTGGGAATCAATACTTCATGCCTGTTTGATTCATGGAGACCTAAAAC TCTCTGAAAGAGTAGCCGAGAGGTTGATGGAACTGGAACCGCAGTCATCTCTACCTTATTTGGTACTGGCTCGGATGTTTGAAATAAGGGGTCAATGGGA AGGTGTGGTTCGAGTTAAGAAAGCCATGAAAAGGGGAAAGGTGGAGAAGGTGATTGGATGCAGTTGGATTGGAGTAAAAAACCAAGTATATACTTTTACG GCAGACCAATTACAGCATCATAGAGGCAAAGAGATTTACTTGGTACTGAGATTACTGAATTGGGAGACGGAGGCTAAAGGTTATTTGCAGTAG
AA sequence Show only first row Show all	>Potri.005G185300.1 pacid=42804870 polypeptide=Potri.005G185301.1.p locus=Potri.005G185300 ID=Potri.005G185300.1.v4.1 annot-version=v4.1 MYPLIKQCHRVSRTSLSYYSYLIDHCFSLKSLSFARITHAQLIKVGLNRHTFLGNRCLDLYSQFGNVNDALKVFDDISSKNIVSWNICLKGLLKFDNLSL ACSVFDDMPERDVVSWNSMISGYASRGYFDCALETFWEMQKLGVRPSEFTYSILMSVVFGVRHGKEIHGSIVRSGLGALNVVLGNSLIDMYGKFSSLDYA LGVFLTMEELDVISWNSLISVCCQSGYPELALDKFCIMRSLGYSPDEFSVSVVITSCLNLRNLEKGKQIFALCVKVGFLCNTIISSATIDLFSKCNRLED SVRLFEEQDQWDSAVCNSMISSYARCGFREDGLRLFVLTLKKDIRPTEFTLSSVLHSTSILKLEQGTQFHSLAVKSGLELDAIVASSLVEMYSKFGFIDC SIKIFNKMVARDLIAWNTMIMGLTHNGRVFEALQTFKELIRTGLPPDRITLAGVLLACSFGGFISEGMTVFSSMEERYGVKPSNEHYACFVDLLCQAGRL DEALYVAESMPYEPVSLIWESILHACLIHGDLKLSERVAERLMELEPQSSLPYLVLARMFEIRGQWEGVVRVKKAMKRGKVEKVIGCSWIGVKNQVYTFT ADQLQHHRGKEIYLVLRLLNWETEAKGYLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43980			Tetratricopeptide repeat (TPR)...		Potri.005G185300 [exp]	0	1
AT2G36980			Tetratricopeptide repeat (TPR)...		Potri.010G020500 [exp]	10.09	0.8075
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	18.81	0.7676
					Potri.007G078000 [exp]	22.44	0.6176
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	23.87	0.7366
AT5G15340			Pentatricopeptide repeat (PPR)...		Potri.017G087600 [exp]	25.21	0.7294
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	27.05	0.7661
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	27.74	0.7284
AT4G11690			Pentatricopeptide repeat (PPR-...		Potri.017G131600 [exp]	30.46	0.5973
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	37.61	0.7541
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	42.21	0.7484

Compare expression of checked genes

Potri.005G185300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.