Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09300 619 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 615 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 326 / 3e-108 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G59900 134 / 9e-35 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 128 / 2e-32 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 114 / 2e-27 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G074900 [exp] 780 / 0 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.005G064000 [exp] 617 / 0 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.010G038400 [exp] 133 / 3e-34 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.008G192500 [exp] 132 / 6e-34 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 116 / 3e-28 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028648 [exp] 656 / 0 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 634 / 0 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 580 / 0 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 502 / 6e-177 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10000772 [exp] 392 / 8e-135 AT1G21400 417 / 1e-145 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10030820 [exp] 135 / 6e-36 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 131 / 1e-33 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10013295 [exp] 130 / 3e-33 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 128 / 1e-32 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 113 / 6e-27 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF00676 [poplar] [flax] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Potri.005G185400.1 pacid=42803720 polypeptide=Potri.005G185400.1.p locus=Potri.005G185400 ID=Potri.005G185400.1.v4.1 annot-version=v4.1 ATGCCTGTTTGGTTCGCAAAATCTAGAGCCATTTCCCATCACTTAAACAGAAAGGTCATGGGTTTCATGGGAATTCTCCACCAAAAGTTTTGGACTTCTT CTTGTTCTAGGCACCCAAGTTCTTTATCATCAATATTTATCCCAGCAGGGATTCACGAGGATCATTCAACTCCACATGTATTTCGATTCAACTCATCATT AATCACCACCCGTTTCTCCCTCCAGCGATTCAAATCCACCAAAGCTGCAAGCCAACTTGAACAGCTCTACTCTACGGATGATGACGATCATGATACTAGC CAGGCCTTGGATTTTCCTGGCGGGAAGGTCACGTACACACCTGAAATGAGATTCTTATCGGAGTCCAATGGGAAGAGAGTACCCTGTTATCGTGTTCTTG ATGACAATGGAGAAATAATCATAGGCAGTGATTATGAACAGTTGAGCGAGGAAGTTGCAGTGAAGATTTATAGTAACATGGTCAGCCTTCAGATGATGGA TACCATATTCTATGAGGCACAGCGCCAAGGGAGAATTTCCTTCTACCTGACCTCAACTGGTGAAGAAGCAATAAACATTGCATCAGCAGCTGCACTAAGT GCAGATGATATTATCTTGCCTCAGTACCGAGAGCCTGGGATTCTATTATGGCGTGGTTTCACAATTCAAGAATTTGCCAACCAATGCTTTGGAAACAAGG ATGATTATGGGAAAGGGAGGCAGATGCCCATACATTATGGGTCTAAGAAGCACAATTTCGTCACAATTTCGTCACCTATAGCAACTCAACTTCCTCAAGC TGTAGGTATTGCTTATTCTCTTAAAATGGACAAAAAGGATTCATGTGTTGTCACATATACTGGAGATGGTGGTACCAGTGAGGGAGATTTTCATGCTGCT TTGAACTTTGCAGCAGTGACAGAAGCTCCTGTGGTCTTCATCTGTCGCAACAATGGCTGGGCCATTAGTACCCATATATCAGAACAATTTCGAAGCGATG GAATTGTTGTCAGGGGTCCAGCTTATGGAATCCGAAGCATCCGGGTGGACGGAAACGATGCTCTTGCTGTCTACAGTGCAATTCATGCAGCTCGCGAAAT GGCCATAAGTAAGCAAAGGCCTGTATTAGTTGAGGCCCTTTCATATAGAGTAGGACACCACTCCACATCTGATGATTCTACGAAGTATCGGCCAGTTGAT GAAATCGACTACTGGAAAAAGGAACGGAATCCTGTAAATAGATTCAGAAAATGGGTGGAAAGAAATGTCTGGTGGAGTGAGGAGAAAGAATCAGAGCTCA GAAGCAGCATCAAGAAGCAGCTTCTGCAAGTGATTCAAGTGGCAGAGAAAACAGAGAAACCTCCACTCAAGTACTTGTTCTCTGATGTCTATGATATTCC ACCACCAAATCTTTGCGAGCAAGAGAAACAACTCAGAGAAACCATCTATGCACATCCTCAGGACTATCCCTCTGATGTCCCACTGTAG
AA sequence Show only first row Show all	>Potri.005G185400.1 pacid=42803720 polypeptide=Potri.005G185400.1.p locus=Potri.005G185400 ID=Potri.005G185400.1.v4.1 annot-version=v4.1 MPVWFAKSRAISHHLNRKVMGFMGILHQKFWTSSCSRHPSSLSSIFIPAGIHEDHSTPHVFRFNSSLITTRFSLQRFKSTKAASQLEQLYSTDDDDHDTS QALDFPGGKVTYTPEMRFLSESNGKRVPCYRVLDDNGEIIIGSDYEQLSEEVAVKIYSNMVSLQMMDTIFYEAQRQGRISFYLTSTGEEAINIASAAALS ADDIILPQYREPGILLWRGFTIQEFANQCFGNKDDYGKGRQMPIHYGSKKHNFVTISSPIATQLPQAVGIAYSLKMDKKDSCVVTYTGDGGTSEGDFHAA LNFAAVTEAPVVFICRNNGWAISTHISEQFRSDGIVVRGPAYGIRSIRVDGNDALAVYSAIHAAREMAISKQRPVLVEALSYRVGHHSTSDDSTKYRPVD EIDYWKKERNPVNRFRKWVERNVWWSEEKESELRSSIKKQLLQVIQVAEKTEKPPLKYLFSDVYDIPPPNLCEQEKQLRETIYAHPQDYPSDVPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	0	1
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	1.00	0.9620
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	2.00	0.9551
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	3.00	0.9496	Pt-BMY.1
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095600 [exp]	5.29	0.9495
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	10.58	0.9301
					Potri.001G077280 [exp]	10.72	0.9093
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	10.81	0.9264
AT5G26940		DPD1	defective in pollen organelle ...		Potri.005G020600 [exp]	11.40	0.9214
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	11.83	0.9137	PDS1.2
AT3G49200			O-acyltransferase (WSD1-like) ...		Potri.001G304600 [exp]	11.95	0.9233

Compare expression of checked genes

Potri.005G185400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.