Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACR3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76990 710 / 0 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G69040 470 / 3e-164 ACR4 ACT domain repeat 4 (.1.2) AT5G25320 447 / 3e-154 ACT-like superfamily protein (.1) AT3G01990 429 / 3e-148 ACR6 ACT domain repeat 6 (.1) AT2G03730 426 / 6e-147 ACR5 ACT domain repeat 5 (.1.2) AT1G12420 383 / 5e-130 ACR8 ACT domain repeat 8 (.1) AT4G22780 383 / 5e-130 ACR7 ACT domain repeat 7 (.1) AT5G65890 346 / 3e-115 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 43 / 0.0004 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G074800 [exp] 855 / 0 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.010G138600 [exp] 473 / 1e-165 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 473 / 2e-165 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 473 / 8e-165 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 462 / 2e-161 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 461 / 9e-161 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 447 / 3e-155 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.006G256500 [exp] 446 / 2e-154 AT5G25320 611 / 0.0 ACT-like superfamily protein (.1) Potri.018G025500 [exp] 432 / 1e-148 AT5G25320 604 / 0.0 ACT-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028646 [exp] 774 / 0 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 759 / 0 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10036827 [exp] 472 / 6e-165 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 462 / 6e-161 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 457 / 6e-159 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10041543 [exp] 419 / 3e-144 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 417 / 1e-143 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10011715 [exp] 394 / 1e-133 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10006662 [exp] 320 / 6e-106 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1) Lus10019191 [exp] 275 / 5e-90 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.005G185600.1 pacid=42804125 polypeptide=Potri.005G185600.1.p locus=Potri.005G185600 ID=Potri.005G185600.1.v4.1 annot-version=v4.1 ATGGCTAAAGTTTGTTGGCCATACTTTGATCCTGAGTATGAGAACTTGAGCACTAGGATTAATCCTCCAAGGGTATCTGTGGACAACACTAGTTGCAGTG ACAGTACTCTTATTAAGGTTGACAGCATGAACAAACCAGGAATTCTCCTGGAAGTTGTGCAAATCCTAACCGATCTTGACCTCATTATCACCAAAGCTTA TATCTCCTCAGATGGTGGTTGGTTCATGGACGTATTTCATGTCACTGACCAACAAGGAAAGAAGATTGCGGATCTTAAAACCATTGACTACATAGAGAAG GCTCTAGGACCGAAGGGCCAAGAAGAAGTGACTACTTGGTCAGGCAAACCGGTTGGAGTGCACTCTGTTGGTGATCACACTGCCATCGAACTCACTGGCA GGGATCGCCCTGGTCTCTTATCTGAAATCTCAGCTGTCCTTGCCAATCTTCACTTCAATGTGGTTGCTGCTGAAGTTTGGACCCACAATAGGCGGATAGC ATGTGTTGTCTATGTCAATGATGACACCACATCCCGTGCTGTAGATGACCCAACTAGATTGTCTGCAATGGAGGACCAGCTCAAGAACATTCTACGTGGG TGTGATGATGATGAGAAGGAGGGTCGTACTAGTTTCTCCATGGGGTTCACTCATGTTGACCGGAGGCTGCACCAAATGTTGTTTGCTGATAGGGATTATG AAGGTGGAATAGTGGCAACTGAGATTCACGATCCTCCTTCCTTCAAGCCAAAGATCACAGTTGAGCATTGTGAGGAAAAAGGATACTCCGTGGTCACTGT TAGATGCAAAGACCGTGCCAAGTTAATGTTTGACATAGTGTGCACTCTCACAGATATGCAATATGTAGTTTTTCATGCTACAATCTCATCTGATGCCCCC CATGCATCACAGGAGTACTATATTCGTCATATGGATGGTTGCGTGCTTGATACTGAAGGGGAGAAGGACAGGGTTATCAAATGCCTTGAAGCTGCGATTA GAAGAAGAGTGAGCGAGGGTTTGAGCCTTGAGCTCTGTGCAAAGGATAGAGTAGGCTTGCTTTCTGAAGTCACAAGAATTCTGCGAGAGAATGGATTATC CGTTTCAAGAGCAGGTGTCATGACAATAGGAGAGCAGGCAATGAATGTTTTCTATGTGAGAGATGCTTCTGGGAACCCAGTGGATATGAAGATTATTGAA GCCCTTCGTAGAGAAATCGGGCACACCATGATGCTTAATGTGAAGAAACCACCGGTTAGTTCCAGAGAACCCGAAGCTAGAGGATGGGCCAAAACAAGTT TCTTCTTTGGGAACTTGCTGGAAAGGTTCTTGGCATGA
AA sequence Show only first row Show all	>Potri.005G185600.1 pacid=42804125 polypeptide=Potri.005G185600.1.p locus=Potri.005G185600 ID=Potri.005G185600.1.v4.1 annot-version=v4.1 MAKVCWPYFDPEYENLSTRINPPRVSVDNTSCSDSTLIKVDSMNKPGILLEVVQILTDLDLIITKAYISSDGGWFMDVFHVTDQQGKKIADLKTIDYIEK ALGPKGQEEVTTWSGKPVGVHSVGDHTAIELTGRDRPGLLSEISAVLANLHFNVVAAEVWTHNRRIACVVYVNDDTTSRAVDDPTRLSAMEDQLKNILRG CDDDEKEGRTSFSMGFTHVDRRLHQMLFADRDYEGGIVATEIHDPPSFKPKITVEHCEEKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHATISSDAP HASQEYYIRHMDGCVLDTEGEKDRVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVSRAGVMTIGEQAMNVFYVRDASGNPVDMKIIE ALRREIGHTMMLNVKKPPVSSREPEARGWAKTSFFFGNLLERFLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Potri.005G185600 [exp]	0	1	Pt-ACR3.2
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	1.00	0.8793
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.011G022800 [exp]	4.00	0.8185
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	5.65	0.8018
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G267900 [exp]	10.58	0.7909
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	10.77	0.7902
AT3G19550			unknown protein		Potri.009G091100 [exp]	17.32	0.8004
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036200 [exp]	18.16	0.8270
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	18.43	0.7542
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	24.00	0.8228	Pt-SYNC2.1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.005G014200 [exp]	29.24	0.7652

Compare expression of checked genes

Potri.005G185600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.