Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77030 1106 / 0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT5G60990 221 / 5e-64 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 205 / 5e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G16630 208 / 7e-57 DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 206 / 2e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G18600 197 / 2e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16280 194 / 5e-54 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT3G01540 197 / 7e-54 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G55150 193 / 2e-53 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 195 / 3e-53 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068800 [exp] 219 / 5e-63 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 215 / 7e-62 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 207 / 2e-56 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G194600 [exp] 205 / 1e-55 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G224000 [exp] 198 / 2e-54 AT5G51280 1072 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.003G038300 [exp] 196 / 2e-54 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G045800 [exp] 200 / 3e-54 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 192 / 1e-53 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G037200 [exp] 195 / 1e-52 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028644 [exp] 1113 / 0 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10018941 [exp] 1113 / 0 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10000777 [exp] 240 / 8e-75 AT1G77030 230 / 1e-71 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10031761 [exp] 214 / 3e-61 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 213 / 6e-61 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015187 [exp] 207 / 6e-57 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042754 [exp] 206 / 8e-56 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10023252 [exp] 200 / 4e-55 AT5G51280 1015 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10015627 [exp] 197 / 1e-54 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 197 / 1e-54 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08147 [poplar] [flax] DBP10CT DBP10CT (NUC160) domain
Representative CDS sequence Show only first row Show all	>Potri.005G185900.3 pacid=42804374 polypeptide=Potri.005G185900.3.p locus=Potri.005G185900 ID=Potri.005G185900.3.v4.1 annot-version=v4.1 ATGGGCAAAGAACCCTTAGTCAGCTCCATGGCAGAGCTAAAACGCAAACAACAAGTAAAAAAGAAATCAAAATCCTGTGGCTTCGAATCCCTTAACCTAA GCCCCAATGTCTTTAGAGGAATCAAGCGTAAGGGTTATCGTGTCCCCACCCCTATCCAACGTAAGACCATGCCTCTTATCCTCGCTGGCATCGACGTCGT CGCTATGGCCCGCACTGGATCCGGCAAGACCGCCGCCTTTCTCCTCCCCATGTTAGAGAAGTTAAAACAGCACCTGCCTCAAAGTGGTGTTAGGGCTCTC ATACTGTCGCCTACTAGGGATTTGGCGTTGCAGACTTTGAAATTCACTAAAGAACTTGGCAGATTCACAGATCTTAGAATTAGTTTATTGGTTGGTGGAG ATCGTATGGAGAGTCAATTTGAGGATTTATCGCAAAACCCTGATATTATTATTGCCACTCCTGGTAGATTAATGCACCATTTGTCTGAGATTGATGACAT GTCGTTGAAAACGGTTGAATATGTTGTTTTTGATGAAGCCGATAGTCTCTTCGGTATGGGTTTTGCTGAGCAGTTGCATAAAATTCTTACCCAGCTGAGC GAGAATCGTCAGACTTTGCTTTTTAGTGCAACTTTGCCCAGTGCACTTGCGGAGTTTGCCAAGGCAGGTTTAAGAGATCCTCAGCTTGTTCGGCTTGATG TGGATACTAAGATTAGTCCTGATTTGAAAACTGTGTTTTTTACCTTGCGCCAAGAGGAAAAATATGCAGCGTTGATTTATTTGATAAGAGATCATATTAG TACCGATCAACAGACATTGATATTTGTTTCTACGAAACATCATGTCGAGTTTCTAAATGTTCTGTTTAGAGAAGAGGGCATTAAGCCTTCGGTTTGTTAT GGTGATATGGATCAAGATGCTCGTAAGATTCATGTATCGAGGTTCAGGGCACGTAAGACTATGTTGTTGATTGTGACAGATGTTGCAGCTAGGGGCATTG ATATTCCGTTGCTTGATAATGTGATAAATTGGGACTTCCCTCCAAAACCTAAGATTTTTGTGCATCGTGTGGGGAGAGTTGCTAGGGCAGGTCGGACTGG AACGGCCTTTTCTTTCGTGACATCTGAAGATATGCCTTACCTTTTAGATCTTCATCTGTTTCTCTCAAAGCCAGTCAAGGCTGCTCCCACTGAGGAGGAG GTTTTGCAGGATATAGATGGAGTAATGAACAAAATTGATCAAGCATTTGCAAATGGAGAGACTGTTTATGGGCGTTTCCCCCAGACTGTCCTTGATCTTG TGTCAGACAGAGTTCGCGAAATCATTGATTCATCAGCTGAACTAACTTCTTTACAGAAAGCCTGTACAAATGCTTTTCGTTTGTATACAAAGACCAAACC ATCACCTGCAAAGGAGTCCATTAAAAGAGTGAAGGATTTACCTTGTGAAGGATTACACCCAATATTCAAAAATGTTTTGGAAGGTGGTGAATTAATGGCA CTTGCCTTTTCTGAGCGTTTGAAAACTTTCAGACCCAAGCAGACTATATTAGAAGCTGAAGGTGAATCAGCCAAGTCAAAGAATCTGCAGGGTCCTGGTC AGTGGGTTGATGTCATGAAGAGAAAAAGAGCTATTCATGAGGAGGTCATTAATTTGGTACAGCAGCAGCGCTCTAACAAGCTGGCAGACAAGCTGGAAGT TGAAACTGAAATTACTTCAGATGAAAAGGAGAAAAAAGTGGTTCGTGGTTCTAAAAGAAAGGCAAAGAGTTTCAAGGATGAGGAATACTTCATTAGTTCA ATACCAACTGATCATCATACAGAGGCAGGTCTCTCAATGAGAGGAAATGATGGCTTTGGATCAAATAGGTTGGAAAATGCTGTGTTGGATCTTGTTGCAG ATGATAGTGGGGGGTTACAGAAACAGAAAACCGTATACCACTGGGATAAGAGGAATAAAAAGTACATCAAACTAAACAATGGTGATCGTGTTACAGCCAG TGGAAAGATAAAGACAGAAAGTGGTGCTAAAGTAAAAGCAACCAAGACTGGGATATACAAGAAGTGGAAAGAAGGGTCACACAGGAAAATATCTCTTAGA GGAACAAATAACGATGGGAATGCTGAGGAATCCACAAGCTTCTCAGGAAACCGCCAATTACGAGGGAATAACAGGAACTTCAGAGGGAGCAAAAAGCAGC ACTCTCTGCCTAATGCTAATGTGCGTTCAGAAATTAAAGATCTTGAACAAGTTCGGAAGGAGAGGCAGAAGAAGGCAGACAGAGTTTCTTATATGAAGAG CAAAGGTTCAAAGGGTAAAAAGTTTGGAAAAAATGGAAAAAGGGGCAAACCTAGGAAGTAA
AA sequence Show only first row Show all	>Potri.005G185900.3 pacid=42804374 polypeptide=Potri.005G185900.3.p locus=Potri.005G185900 ID=Potri.005G185900.3.v4.1 annot-version=v4.1 MGKEPLVSSMAELKRKQQVKKKSKSCGFESLNLSPNVFRGIKRKGYRVPTPIQRKTMPLILAGIDVVAMARTGSGKTAAFLLPMLEKLKQHLPQSGVRAL ILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDRMESQFEDLSQNPDIIIATPGRLMHHLSEIDDMSLKTVEYVVFDEADSLFGMGFAEQLHKILTQLS ENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVFFTLRQEEKYAALIYLIRDHISTDQQTLIFVSTKHHVEFLNVLFREEGIKPSVCY GDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPVKAAPTEEE VLQDIDGVMNKIDQAFANGETVYGRFPQTVLDLVSDRVREIIDSSAELTSLQKACTNAFRLYTKTKPSPAKESIKRVKDLPCEGLHPIFKNVLEGGELMA LAFSERLKTFRPKQTILEAEGESAKSKNLQGPGQWVDVMKRKRAIHEEVINLVQQQRSNKLADKLEVETEITSDEKEKKVVRGSKRKAKSFKDEEYFISS IPTDHHTEAGLSMRGNDGFGSNRLENAVLDLVADDSGGLQKQKTVYHWDKRNKKYIKLNNGDRVTASGKIKTESGAKVKATKTGIYKKWKEGSHRKISLR GTNNDGNAEESTSFSGNRQLRGNNRNFRGSKKQHSLPNANVRSEIKDLEQVRKERQKKADRVSYMKSKGSKGKKFGKNGKRGKPRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77030			hydrolases, acting on acid anh...		Potri.005G185900 [exp]	0	1
AT2G17670			Tetratricopeptide repeat (TPR)...		Potri.005G103300 [exp]	1.00	0.9436
AT3G13990			Kinase-related protein of unkn...		Potri.003G063300 [exp]	2.00	0.9070
AT5G57120			unknown protein		Potri.006G073100 [exp]	2.82	0.9139
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.005G222900 [exp]	3.87	0.9135
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	3.87	0.8853
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.012G012800 [exp]	4.00	0.8945
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	6.24	0.8885
AT5G07900			Mitochondrial transcription te...		Potri.001G029400 [exp]	6.48	0.8872
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	8.77	0.8975
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	9.21	0.9027	ELF5.2

Compare expression of checked genes

Potri.005G185900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.