Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43900 422 / 3e-149 Protein phosphatase 2C family protein (.1) AT4G31750 336 / 3e-116 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 330 / 8e-112 Protein phosphatase 2C family protein (.1) AT5G10740 323 / 3e-110 Protein phosphatase 2C family protein (.1) AT5G53140 291 / 4e-97 Protein phosphatase 2C family protein (.1) AT2G20630 181 / 5e-56 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 181 / 7e-56 Protein phosphatase 2C family protein (.1) AT1G78200 177 / 4e-54 Protein phosphatase 2C family protein (.1.2) AT3G15260 172 / 3e-52 Protein phosphatase 2C family protein (.1.2) AT1G34750 171 / 5e-52 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G074500 [exp] 481 / 8e-174 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 341 / 2e-118 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 339 / 1e-117 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 300 / 2e-101 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 296 / 7e-100 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 184 / 7e-57 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 182 / 4e-56 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 175 / 3e-53 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 172 / 2e-52 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042775 [exp] 431 / 2e-150 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 412 / 4e-142 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 336 / 5e-116 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 330 / 3e-114 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 311 / 5e-107 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 311 / 6e-107 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 297 / 1e-100 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 291 / 2e-97 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10039341 [exp] 234 / 9e-75 AT5G53140 444 / 1e-154 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 182 / 6e-56 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.005G186001.1 pacid=42804027 polypeptide=Potri.005G186001.1.p locus=Potri.005G186001 ID=Potri.005G186001.1.v4.1 annot-version=v4.1 ATGATCTCTAATAGAGATCCCGATGCCATCTTTAGCGGCGGCGGGATCAGTTTTCTTAACGGAAGCCGGACTGCCAAGTTTAATTATGGATATTCGAGTT TTAAGGGTAAAAGAGCTTCCATGGAGGATTTCTATGAGACAAGGATTTCTGAAGTTGATGGTCAAATGGTTGCCTTCTTTGGTGTTTTTGATGGTCATGG AGGTGTTCGGACTGCAGAATATCTGAAAAATAACCTTTTCAAGAATTTGAGTAGCCACCCTGATTTTATCAGAGACACAAAGACAGCTATTGTCGAAGCA TTTAGACAGACAGATGCAGATTACCTCCATGAAGAAAAGGCCCATCAAAAAGATGCCGGGTCAACTGCGTCAACTGCTGTGCTTCTAGGGGACCGGCTGC TTGTTGCAAATGTTGGCGATTCTCGAGTTGTTGCCTGCAGAGGTGGTTCAGCTATCCCGTTGTCTATTGATCATAAACCTGATAGATCTGATGAACGCCA AAGGATTGAAGAGGCTGGAGGTTTCATCATATGGGCAGGAACTTGGCGGGTGGGTGGCGTGCTTGCTGTTTCTCGTGCATTTGGGGATAAGCTACTTAAG CCATATGTGGTTGCTGAGCCAGAAATTCAGGAAGAAGAAATTGGTGGTGTTGAATTTATAATTGTTGCAAGCGATGGGCTATGGAATGTCCTATCAAATA AGGACGCAGTGGCACTAGTGCAGGGCATAGCAGATGCAGAGGCAGCGGCAAGAAAACTAATACAAGAAGCTTATGCACGAGGGAGCCATGACAACATAAC CTGTGTCGTCGTCAGGTTTGATAACTCATGA
AA sequence Show only first row Show all	>Potri.005G186001.1 pacid=42804027 polypeptide=Potri.005G186001.1.p locus=Potri.005G186001 ID=Potri.005G186001.1.v4.1 annot-version=v4.1 MISNRDPDAIFSGGGISFLNGSRTAKFNYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGVRTAEYLKNNLFKNLSSHPDFIRDTKTAIVEA FRQTDADYLHEEKAHQKDAGSTASTAVLLGDRLLVANVGDSRVVACRGGSAIPLSIDHKPDRSDERQRIEEAGGFIIWAGTWRVGGVLAVSRAFGDKLLK PYVVAEPEIQEEEIGGVEFIIVASDGLWNVLSNKDAVALVQGIADAEAAARKLIQEAYARGSHDNITCVVVRFDNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43900			Protein phosphatase 2C family ...		Potri.005G186001 [exp]	0	1
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.002G173800 [exp]	2.44	0.8550
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.007G137600 [exp]	5.29	0.8417
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	8.66	0.8244
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Potri.011G119000 [exp]	10.58	0.7894	ATCOX17.1
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.018G005800 [exp]	17.43	0.7868
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	19.74	0.8194
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G023700 [exp]	19.89	0.7877
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Potri.016G084800 [exp]	23.87	0.7491	APX1.1
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.006G158538 [exp]	24.37	0.7749
AT4G28820			HIT-type Zinc finger family pr...		Potri.002G252700 [exp]	24.49	0.7907

Compare expression of checked genes

Potri.005G186001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.