Plant FIBer expression Database

Potri.005G186700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43860 514 / 0 sequence-specific DNA binding transcription factors (.1)
AT4G31420 46 / 3e-05 C2H2ZnF Zinc finger protein 622 (.1.2)
AT2G24500 42 / 0.0005 C2H2ZnF FZF Zinc finger protein 622 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G073200
[exp]
616 / 0 AT1G43860 560 / 0.0 sequence-specific DNA binding transcription factors (.1)
Potri.018G006300
[exp]
43 / 0.0002 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2)
Potri.006G275300
[exp]
42 / 0.0004 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042780
[exp]
538 / 0 AT1G43860 545 / 0.0 sequence-specific DNA binding transcription factors (.1)
Lus10029749
[exp]
531 / 0 AT1G43860 539 / 0.0 sequence-specific DNA binding transcription factors (.1)
Lus10026949
[exp]
45 / 5e-05 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2)
Lus10020150
[exp]
45 / 8e-05 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01172 SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein
CL0437 EF-G_C PF09377 SBDS_C SBDS protein C-terminal domain
Representative CDS sequence
>Potri.005G186700.1 pacid=42803919 polypeptide=Potri.005G186700.1.p locus=Potri.005G186700 ID=Potri.005G186700.1.v4.1 annot-version=v4.1
ATGTCGGTGAAGTTGCAGCAGCCGGTAGGGCAAAAACGGCTGACGAACGTAGCAGTGGTCCGATTAAAGAAGCATGGTATGCGTTTCGAGATTGCTTGTT
ACAAGAACAAGGTCCTCTCTTGGCGCTCTGGCGTAGAGAAAGATTTGGATGAAGTGCTGCAGTCCCACCACACAGTTTATTCAAATGTTTCCAAAGGAAT
TCTTGCAAAATCTTTAGATTTGAATAAAGCTTTTGGACATGATGATCAGACCAGAATTTGCCTCGAGATATTGGACAAAGGGGAGCTTCAAGTGGCCGGG
AAAGAGAGGGAATCTCAGTTGTCTAGTCAGTTTCGGGATATCGCAACTATTGTTATGCAGAAAACTATTAATCCCGAAACCCAACGTCCTTACACTATCA
GTATGATTGAGAGATTGATGCATGAAACTCACTTTGCTGTTGAACCGCATAACAGCTCTAAGAAGCAGGCGCTAGATGTTATTCGTGAGCTTCAAAAGCA
TTTTCCAATCAAGCGGTCTCCAATGAGACTTGGGCTTACTGTTAGTGGACAGAATTTTTCTACTCTATTGGAAAAGCTTGGTGCCTGGGATGCTAATGTT
GTTTCGAAAGATGAATCTGGAAGTCGTCAATCTATTATTTGTGAAATGGACCCAGGTTTCTTCAGGGACTGCGATACCTTGGTGAGGAATCTGCAGGGCA
GGCTGGAAATTCTTGCGGTGTCTGTTCATTTTGAGGAGGACACCCATGTAGATGACTATGATGACTATGAAGATGTGCCCTCAGCCCTACCCAAGGGATC
TACTGATTCTGCTGTACAACTGAGTGAGAAAATCCAAAAGCAGACTCTCTCTGATGAAAAGAAAGCTGGGGCGGAGGTAAAGCAAAACAGGTGCAGCACG
TGCAATGTGTCTGTTGGGGATGCAAAGCAGTTCAGGGATCACTTCAAGAGCGACTGGCACAAACATAATTTGAAGCGCAAGACCAAGCAGCTGCCTCCTC
TTACTTCAGAAGAGTGTTTGGGTGACATGGACATGAATGACTCGAACACAGATATAAAAGAATACTCGTTTTGA
AA sequence
>Potri.005G186700.1 pacid=42803919 polypeptide=Potri.005G186700.1.p locus=Potri.005G186700 ID=Potri.005G186700.1.v4.1 annot-version=v4.1
MSVKLQQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHHTVYSNVSKGILAKSLDLNKAFGHDDQTRICLEILDKGELQVAG
KERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMHETHFAVEPHNSSKKQALDVIRELQKHFPIKRSPMRLGLTVSGQNFSTLLEKLGAWDANV
VSKDESGSRQSIICEMDPGFFRDCDTLVRNLQGRLEILAVSVHFEEDTHVDDYDDYEDVPSALPKGSTDSAVQLSEKIQKQTLSDEKKAGAEVKQNRCST
CNVSVGDAKQFRDHFKSDWHKHNLKRKTKQLPPLTSEECLGDMDMNDSNTDIKEYSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43860 sequence-specific DNA binding ... Potri.005G186700
[exp]
0 1
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Potri.005G048900
[exp]
3.74 0.7786 XRN4.1
AT4G03080 BSL1 BRI1 suppressor 1 (BSU1)-like ... Potri.002G213300
[exp]
4.47 0.7318 Pt-PP1.5
AT5G10900 Calcineurin-like metallo-phosp... Potri.001G196600
[exp]
10.81 0.7607
AT3G08505 C3HZnF zinc finger (CCCH-type/C3HC4-t... Potri.001G268200
[exp]
11.83 0.7032
AT2G40700 P-loop containing nucleoside t... Potri.019G059100
[exp]
14.07 0.7088
AT5G06410 DNAJ heat shock N-terminal dom... Potri.006G200900
[exp]
14.96 0.7340
AT1G67960 POD1 POLLEN DEFECTIVE IN GUIDANCE 1... Potri.010G103400
[exp]
18.54 0.6648
AT2G43210 Ubiquitin-like superfamily pro... Potri.017G036600
[exp]
19.67 0.7116
AT5G66180 S-adenosyl-L-methionine-depend... Potri.007G056800
[exp]
20.34 0.7261
AT5G09540 Chaperone DnaJ-domain superfam... Potri.007G114800
[exp]
22.13 0.7113

Potri.005G186700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.