Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43850 612 / 0 SEU SEUSS transcriptional co-regulator (.1.2) AT5G62090 321 / 3e-96 SLK2 SEUSS-like 2 (.1.2) AT4G25515 310 / 2e-93 SLK3 SEUSS-like 3 (.1) AT4G25520 306 / 3e-91 SLK1 SEUSS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072900 [exp] 1206 / 0 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 636 / 0 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.012G136100 [exp] 350 / 3e-106 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 345 / 2e-104 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 293 / 8e-87 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.013G089900 [exp] 258 / 2e-80 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 239 / 7e-70 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2) Potri.010G052150 [exp] 96 / 3e-23 AT1G43850 49 / 9e-08 SEUSS transcriptional co-regulator (.1.2) Potri.001G355900 [exp] 90 / 9e-22 AT1G43850 49 / 3e-08 SEUSS transcriptional co-regulator (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042785 [exp] 892 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 878 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 553 / 0 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 452 / 3e-149 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2) Lus10038880 [exp] 341 / 5e-103 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10015002 [exp] 236 / 9e-66 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10006324 [exp] 227 / 2e-64 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10029594 [exp] 122 / 1e-28 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10029753 [exp] 103 / 3e-26 AT1G43850 42 / 9e-06 SEUSS transcriptional co-regulator (.1.2) Lus10000198 [exp] 0 / 1 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01803 [poplar] [flax] LIM_bind LIM-domain binding protein
Representative CDS sequence Show only first row Show all	>Potri.005G186900.1 pacid=42803883 polypeptide=Potri.005G186900.1.p locus=Potri.005G186900 ID=Potri.005G186900.1.v4.1 annot-version=v4.1 ATGGTGCCCTCGGGGCCGCCTACTCCAATTGGGGGTGCCCAGTCTGTTTCTCCTTCACTTTTGAGATCAAATTCGGGGATGTTGGGAGCTCAAGGTGGTC CTTTGAGTTCCCAAACAGCATTCCCTTCTCTAATGTCCCCCCGTACTCAGTTTAATAACATGAGCATGCTTGGAAATGTGCCCTCCCTCCTGAACCAGTC TTTTGGGAACGGAGGTCCAAATCCTGGACTTCCTGGGCCTGGGAGCAGTCAGCGTGGAAATATTGATACCGGGGCAGAGTCTGATCCACTTTCAAATGTT GGTAATGGAATGGGTTTCAATGCTCCTCCACCGTCATTTGTACCGTCAAATATGGTTAATCCTGGACCTTCAGGTCAAGTTCAGGGACAACAGTTTTCAA ATCCTTCCGGCAACCAGTTGTTGCCCGATCAACAACAGTCCCAACAACTTGAAGCACAAAGTTTCCAGCATGGTCAGCAATCAATGCAACAGTTCTCTGG CTCTCACAACGCCCAGCAGGTGCAGCAGCAACATCAATTTCAATCAATACGAGGAGGGTTAGCTGGTGTTGGACCTGTTAAGATGGAGCCACATGTGACA AATGATCAACATGGAGCACAGCAGCCGCAGCCACTGAGAAATCTGGGTCCAGTCAAGTTGGAGCCACAGCAAATTCAGACGATGCGAAATTTGTCAACGG TAAAGTTGGAACCGCAACATTCAGATCAATCTTTGTTTTTACAACAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCAGCAGCAGCA GCAGCATCAGCAGCAGCAGCATCAGCAGCAACAGCAGCAGCAGCATCAGCAGCAGTTCCTTCACATGTCAAGGCAGTCATCTCAGCAGGCTGTTGTACAA CTAAATCTTTTGCATCAGCAAAGGATTCTGCAAATGCATCAGCAACAGCAACAGCAACAGCAACAGCAACTTTTGAAGGCAATGCCTCAGCAAAGGCCTC AATTACCACAACAATTTCAACAACAGAACTTACCTTTGAGATCTCCAGTAAAATCAGTATATGAACCTGGGATGTGTGCCCGTCGTCTCACAAATTACAT GCATCAACAGCAGCGCAGACCTGAAGACAATAACATTGATTTCTGGAGGAAATTTGTTTCTGAGTTCTTTGCTCCCCATGCAAAAAAGAAGTGGTGTGTT TCTATGTATGGAAGTGGCCGGCAAACAGCTGGTGTTTTCCCTCAGGATGTATGGCATTGTGAGATTTGCAATCGCAAGCCAGGCCGGGGTTTTGAGGCAA CTGTTGAGGTTCTTCCCAGGCTTTTCAAAATCAAATATGAAAGTGGTACCTTGGAAGAACTTCTTTATGTTGATATGCCACGTGAATATCAAAACTCATC CGGTCAAATTGTTCTGGATTATGCGAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGCGTTGTTCGTGATGGTCAACTACGGATAGTCTTCTCTCCA GATTTGAAGATATGCTCATGGGAGTTTTGTGCTCGACGGCATGAAGAGCTTATACCTCGAAGATTGTTGATACCACAGGTAAGTCAGCTTGGTGCTGCAG CTCAAAAGTATCAGGCTGCCACTCAAACTGCATCGTCCAATTTATCTGTCCCAGAGTTGCAAAATAATTGTACCATGTTTGTTGCATCAGCTCGACAACT GGCAAAAGCCTTGGAAGTGCCATTAGTAAACGATCTAGGATATACTAAGAGATATGTACGGTGCCTTCAGATATCAGAAGTGGTAAATAGTATGAAAGAC TTGATTGATTATAGCCGAGAAACAGGAACTGGACCAATGGAGAGTTTGGCCAAGTTCCCTCGGAGGACAGGTTCTTCATCTGGGTTCCATAGTCAAGCTC CACAGCCTGAGGGACAGCAGCAGCAACAGCAGCAACTGCAAACAATACCCAAGAACTCAAATAGTGATCGAAGTTCAGCCCAAGTCCCAATGCAAATCAC TGCTAGCAATGGTATGGCTAGTGTAAATAACTCACTCACCACAGCATCTACAACCACGTCTGCCAGCACTATTGTGGGGCTTCTCCACCAAAATTCAATG AATTCAAGACACCAAAATTCTATGAATAATGCAAGCAGTCCCTATGGAGGAAACTCTGTTCAGATTCCATCTCCTGGTTCCTCTGGTACGATTCCACAGG CACAACCTAATCCTTCTCCTTTCCAGTCACCAACACCCTCATCATCAAATAATCCTCCACAAACATCTCATAGTGCCTTGACAACTTCCAATCATATTAG TTCCACAAATTCACCAGCAAACATTCCCTTGCAACAGCCAGCTCTTTCTGGTGAGGCTGACCATGGTGATTCTCAAAGCTCTGTCCAGAAAATCTTACAT GACATCATGTTGTCCAACCAACTTAATGGAAATGGTGGAATGGTTGGGGTTGGTTCTTTGGTGAATGACGTGAAAAATGTTAATGGGATTTTGTCAACAG GCAACAATACGGTTCTCAATGGAGGAAATGGCCTGGTGGGAAATGGGACAGTCAATAGTTCTGGAATAGGGGGTGCTGGATATGGCACCATGGGTGGACT TGTGCAGTCTACAGTGGTCAATGGAATCAGAGCTGCAATGGGTAATAACTCTATAATGAATGGTCGGATGGGTATGCCATCGATGGTACGAGACCAGAGC ATGAATCATCAACATGATTTGGGGAACCAGCTGCCTAGTGGGCTAGGAGCAGTTAATGGGTTTAGTAATCTTCAGTTTGATTGGAAACCATCCCCTTGA
AA sequence Show only first row Show all	>Potri.005G186900.1 pacid=42803883 polypeptide=Potri.005G186900.1.p locus=Potri.005G186900 ID=Potri.005G186900.1.v4.1 annot-version=v4.1 MVPSGPPTPIGGAQSVSPSLLRSNSGMLGAQGGPLSSQTAFPSLMSPRTQFNNMSMLGNVPSLLNQSFGNGGPNPGLPGPGSSQRGNIDTGAESDPLSNV GNGMGFNAPPPSFVPSNMVNPGPSGQVQGQQFSNPSGNQLLPDQQQSQQLEAQSFQHGQQSMQQFSGSHNAQQVQQQHQFQSIRGGLAGVGPVKMEPHVT NDQHGAQQPQPLRNLGPVKLEPQQIQTMRNLSTVKLEPQHSDQSLFLQQQQHQQQQQQQQHQQQQQQQHQQQQHQQQQQQQHQQQFLHMSRQSSQQAVVQ LNLLHQQRILQMHQQQQQQQQQQLLKAMPQQRPQLPQQFQQQNLPLRSPVKSVYEPGMCARRLTNYMHQQQRRPEDNNIDFWRKFVSEFFAPHAKKKWCV SMYGSGRQTAGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSP DLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQTASSNLSVPELQNNCTMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKD LIDYSRETGTGPMESLAKFPRRTGSSSGFHSQAPQPEGQQQQQQQLQTIPKNSNSDRSSAQVPMQITASNGMASVNNSLTTASTTTSASTIVGLLHQNSM NSRHQNSMNNASSPYGGNSVQIPSPGSSGTIPQAQPNPSPFQSPTPSSSNNPPQTSHSALTTSNHISSTNSPANIPLQQPALSGEADHGDSQSSVQKILH DIMLSNQLNGNGGMVGVGSLVNDVKNVNGILSTGNNTVLNGGNGLVGNGTVNSSGIGGAGYGTMGGLVQSTVVNGIRAAMGNNSIMNGRMGMPSMVRDQS MNHQHDLGNQLPSGLGAVNGFSNLQFDWKPSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	0	1
AT5G43920			transducin family protein / WD...		Potri.014G194100 [exp]	1.41	0.9161
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Potri.004G111500 [exp]	1.73	0.9160
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	2.00	0.9201
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Potri.006G176600 [exp]	2.82	0.8882
AT4G01290			unknown protein		Potri.002G163000 [exp]	4.00	0.9005
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	7.54	0.8754
AT1G72390			unknown protein		Potri.001G165800 [exp]	7.74	0.8979
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	8.83	0.8825
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	9.16	0.8918
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	9.94	0.8837

Compare expression of checked genes

Potri.005G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.