Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21460 365 / 6e-129 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G53190 196 / 3e-62 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT4G10850 181 / 1e-56 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT3G14770 177 / 3e-55 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT1G66770 177 / 8e-55 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G40260 174 / 3e-54 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT4G15920 174 / 4e-54 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT5G62850 170 / 2e-52 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT3G16690 163 / 8e-50 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT4G25010 164 / 9e-50 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072700 [exp] 407 / 7e-146 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 406 / 2e-145 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 406 / 2e-145 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.015G021900 [exp] 198 / 3e-63 AT5G53190 286 / 9e-98 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 190 / 3e-60 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.012G031400 [exp] 189 / 9e-60 AT5G53190 310 / 3e-107 Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 182 / 9e-57 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 181 / 1e-56 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 179 / 4e-56 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018932 [exp] 357 / 1e-125 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 342 / 5e-120 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10011990 [exp] 206 / 1e-66 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10014932 [exp] 197 / 1e-62 AT5G53190 295 / 6e-101 Nodulin MtN3 family protein (.1) Lus10015245 [exp] 190 / 4e-60 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10005411 [exp] 188 / 2e-59 AT3G14770 258 / 2e-87 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 184 / 7e-58 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002783 [exp] 180 / 3e-55 AT3G14770 226 / 4e-73 Nodulin MtN3 family protein (.1) Lus10023249 [exp] 173 / 2e-53 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 171 / 9e-53 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.005G187300.3 pacid=42803079 polypeptide=Potri.005G187300.3.p locus=Potri.005G187300 ID=Potri.005G187300.3.v4.1 annot-version=v4.1 ATGGATGTCCTGCATTTCTTGTTTGGAGTTTTTGGAAATGCCACTGCTTTGTTTCTCTTCTTGGCTCCAACGATAACTTTCAAGAGGATCATAAGAAGCA AATCCATAGAGCAGTTCTCTGGCATTCCGTATGTGATGACCTTGCTCAACTGCCTCCTTTCCGCTTGGTATGGACTGCCTTTCGTGTCCAAGAACAATGT TTTGGTGTCAACAATCAATGGAGCTGGCTCAGCAATTGAAACCATCTATGTGTTGATCTTCATCATCTATGCACCAAAGAAAGAGAAGGCTAAAGTCCTT GGCCTCCTCACTCTTGTGATCACCATCTTTACTGGCGTGGCCTTGGTGTCCCTTTTTGCTCTTCATGGCAACGCCAGGAAGCTATTCTGTGGCTGTGCTG CTGCTGTTTTCTCTATTATCATGTATGGCTCCCCACTGTCTATCATGAGGACAGTGATTAAAACTAAGAGCGTCGAGTACATGCCATTCTTCCTGTCACT GTTTGTCTTCTTATGCGGCACTTCCTGGTTTGTCTATGGTCTACTTGGTAGAGACCCTTTCGTTGCCGTCCCAAATGGAGTTGGCTGTGGTCTAGGGGCA TTACAGCTGATATTGTACTTCATCTACCGTAACAACAAGGGCGAGGCCAAGAAGCCCATCTCTACTCATTCACTAGAGATTGGTCCCGGAAAAGTCCACC AAGAGAAGAAATTGGTTGCCAATGGATCCCATGATGAACGAGTGTAG
AA sequence Show only first row Show all	>Potri.005G187300.3 pacid=42803079 polypeptide=Potri.005G187300.3.p locus=Potri.005G187300 ID=Potri.005G187300.3.v4.1 annot-version=v4.1 MDVLHFLFGVFGNATALFLFLAPTITFKRIIRSKSIEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNVLVSTINGAGSAIETIYVLIFIIYAPKKEKAKVL GLLTLVITIFTGVALVSLFALHGNARKLFCGCAAAVFSIIMYGSPLSIMRTVIKTKSVEYMPFFLSLFVFLCGTSWFVYGLLGRDPFVAVPNGVGCGLGA LQLILYFIYRNNKGEAKKPISTHSLEIGPGKVHQEKKLVANGSHDERV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.005G187300 [exp]	0	1
AT5G04590		SIR	sulfite reductase (.1)		Potri.001G257000 [exp]	4.24	0.7208	Pt-SIR.2
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.008G166200 [exp]	4.69	0.7265
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023550 [exp]	16.43	0.6035
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G199900 [exp]	16.52	0.7164
AT3G28960			Transmembrane amino acid trans...		Potri.017G083700 [exp]	18.49	0.6754
					Potri.016G037100 [exp]	19.28	0.6854
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.019G018500 [exp]	20.59	0.6737
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.008G210900 [exp]	25.92	0.6410	Pt-RAP2.4,ERF35
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.006G103900 [exp]	26.17	0.6807
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.002G006700 [exp]	28.63	0.6538

Compare expression of checked genes

Potri.005G187300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.