Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21480 714 / 0 Exostosin family protein (.1.2) AT4G16745 92 / 9e-20 Exostosin family protein (.1.2) AT5G19670 88 / 2e-18 Exostosin family protein (.1) AT2G35100 87 / 2e-18 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G25310 85 / 2e-17 Exostosin family protein (.1) AT4G38040 84 / 3e-17 Exostosin family protein (.1) AT5G16890 84 / 5e-17 Exostosin family protein (.1) AT5G44930 83 / 5e-17 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT5G22940 83 / 5e-17 F8H FRA8 homolog (.1) AT2G28110 77 / 5e-15 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072300 [exp] 879 / 0 AT1G21480 695 / 0.0 Exostosin family protein (.1.2) Potri.015G124800 [exp] 90 / 5e-19 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.007G116800 [exp] 85 / 1e-17 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.012G124600 [exp] 84 / 5e-17 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.019G044600 [exp] 84 / 6e-17 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.006G118000 [exp] 83 / 9e-17 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.007G058400 [exp] 82 / 1e-16 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 82 / 1e-16 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 82 / 2e-16 AT5G19670 693 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028632 [exp] 776 / 0 AT1G21480 704 / 0.0 Exostosin family protein (.1.2) Lus10018930 [exp] 652 / 0 AT1G21480 612 / 0.0 Exostosin family protein (.1.2) Lus10012973 [exp] 94 / 4e-20 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 92 / 5e-20 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 91 / 3e-19 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 89 / 1e-18 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10034951 [exp] 89 / 1e-18 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 87 / 3e-18 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10012723 [exp] 84 / 3e-17 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10002664 [exp] 83 / 6e-17 AT4G38040 677 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.005G187400.1 pacid=42803323 polypeptide=Potri.005G187400.1.p locus=Potri.005G187400 ID=Potri.005G187400.1.v4.1 annot-version=v4.1 ATGGGAAGCCCGAACAACAGACCCACCAGAATCTTCTCTCTTCACCACCACAATACGCCACCATGCACCCGCTCCCACCAGATTGGCGCTCTCCTCTTAG TCGCCTCCACTTTCTTCCTCACTCGTCTCTTCGACCACCCGTTCTCAACTTGCCCTCCCTCCTCCTTAAATCACGACCACACATCACAAAACGTCGTTCA CTTTTCCGACGGTGGATCTCTCTCCTGGCCCCAGATGGGCTACGGGACCCACCTCTCCCTCAAGATCTACGTCTACGAGGAAGACGAAATTGACGGATTG AAGGAACTCTTGCGAGGCAGAGAAGGAAGAATCTCTGCTGATGCTTGCGTTAAAGGCCAGTGGGGCACTCAGGTTAAGATACACAGGTTGTTGTTGCAAT CGAGATTTAGGACTAGAAAGAAAGGGGAAGCTAATTTATTCTTTGTGCCTGCCTATGCCAAATGTGTACGGATGATGGGTGGTTTGAATGATAAGGAAAT TAACCACACTTATGTTAAGGCATTGAGTCAAATGCCCTACTTTAGAAGATCAGGAGGACGTGATCACATTTTTGTCTTCCCTAGTGGTGCCGGAGCTCAC TTATTTAGATCTTGGGCGACTTACATTAATCGTTCCATAATTCTTTCTCCTGAGGGGGATAGGACTGATAAGAAAGATACGAGTTCTTTTAATACATGGA AAGACATTATCATTCCCGGAAATGTTGAAGATGGGATGACTAAAAGAGGGGCAGCGATGGCTCAACCTCTACCTTTATCAAAGAGGAAGTATTTGGCGAA TTATTTAGGTCGTGCGCAGGGGAAAGTTGGCCGCCTGAAGTTAATAGAGCTTGCAAAGCAGTATCCAGATAAGTTGGAATGTCCAGAGTTGAAGTTCAGC GGTCCAGAGAAATTTGGAAGGATGGAATATTTTCAACACCTGCGCAATGCAAAGTTCTGCGTTGCTCCACGTGGAGAGTCTTCTTGGACGCTTCGGTTTT ATGAGTCATTTTTTGTGGAGTGTGTCCCGGTTATATTATCAGATCAAGCAGAATTTCCTTTCCAAAATGTGATTGACTACACCCAGATATCAATCAAATG GCCATCTACTCGAATAGGGCTGGAACTTTTGGAGTATCTAGAATCAATTCCAGATGAAGATGTAGAGCGGATGATAGCTGCTGGTAGACAAGTAAGATGC TTGTGGGTATATGCTCCAGAACTTGAGTTGTGTTCTGCAATGCAAGGAATAATGTGGGAACTTCAGAGAAAAGTACGGCAGTTTCACCAATCAGCTGAGA CATTCTGGCTGCACAATCGAACTATTGTTAACAGAAACATGGTTGAGTTCTCAAGCTGGAAGCCTCCCATGCCTTTGCCTTGA
AA sequence Show only first row Show all	>Potri.005G187400.1 pacid=42803323 polypeptide=Potri.005G187400.1.p locus=Potri.005G187400 ID=Potri.005G187400.1.v4.1 annot-version=v4.1 MGSPNNRPTRIFSLHHHNTPPCTRSHQIGALLLVASTFFLTRLFDHPFSTCPPSSLNHDHTSQNVVHFSDGGSLSWPQMGYGTHLSLKIYVYEEDEIDGL KELLRGREGRISADACVKGQWGTQVKIHRLLLQSRFRTRKKGEANLFFVPAYAKCVRMMGGLNDKEINHTYVKALSQMPYFRRSGGRDHIFVFPSGAGAH LFRSWATYINRSIILSPEGDRTDKKDTSSFNTWKDIIIPGNVEDGMTKRGAAMAQPLPLSKRKYLANYLGRAQGKVGRLKLIELAKQYPDKLECPELKFS GPEKFGRMEYFQHLRNAKFCVAPRGESSWTLRFYESFFVECVPVILSDQAEFPFQNVIDYTQISIKWPSTRIGLELLEYLESIPDEDVERMIAAGRQVRC LWVYAPELELCSAMQGIMWELQRKVRQFHQSAETFWLHNRTIVNRNMVEFSSWKPPMPLP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21480			Exostosin family protein (.1.2...		Potri.005G187400 [exp]	0	1
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.018G067700 [exp]	2.44	0.9023
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.002G138700 [exp]	3.16	0.9120
AT3G48820			Glycosyltransferase family 29 ...		Potri.015G104100 [exp]	5.19	0.9006
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G097500 [exp]	7.07	0.8838
AT3G28430			unknown protein		Potri.006G204600 [exp]	9.59	0.8972
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.005G010600 [exp]	10.95	0.8463
AT2G30700			unknown protein		Potri.007G133733 [exp]	12.00	0.8869
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	14.00	0.8791	ATMAK3.5
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	14.38	0.8864	Pt-VPS33.2
AT1G76660			unknown protein		Potri.002G001100 [exp]	17.86	0.8835

Compare expression of checked genes

Potri.005G187400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.