Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PIN4,Pt-PIN6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77110 707 / 0 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT2G01420 455 / 2e-154 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G73590 287 / 3e-89 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G23080 278 / 1e-86 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 271 / 5e-83 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT5G57090 268 / 9e-82 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT5G15100 173 / 8e-49 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 170 / 6e-48 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072200 [exp] 973 / 0 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 496 / 5e-170 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 488 / 2e-167 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 486 / 3e-166 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 483 / 1e-165 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 412 / 5e-139 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 293 / 1e-91 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 280 / 3e-86 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 279 / 8e-86 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009685 [exp] 277 / 5e-88 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 276 / 4e-85 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 248 / 2e-79 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 259 / 2e-78 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 258 / 1e-77 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009686 [exp] 242 / 2e-77 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10020830 [exp] 241 / 3e-77 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 231 / 2e-73 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 239 / 5e-73 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 229 / 1e-69 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.005G187500.1 pacid=42802862 polypeptide=Potri.005G187500.1.p locus=Potri.005G187500 ID=Potri.005G187500.1.v4.1 annot-version=v4.1 ATGATCACTGCAGATGATTTCTACAAGGTCATGTGTGCAATGGTGCCTCTGTATTTTGCAATGCTGGTTGCGTATGGATCAGTGAAATGGTACAAGATAT TCACACCAGAGCAGTGCTCAGGGATCAACAGATTTGTTGCTGTTTTTGCAGTCCCTGTGCTGTCTTTCCACTTCATCGCTCAAAACAATCCATACCAAAT GGACACCAAGTTCATACTGGCTGATACTCTTTCGAAAGTCTTAGCCCTTGTTCTGCTCTCAGTGTGGGCTGTTTTCTTTAATGGAGAATTTGACTGGCTT ATCACTCTCTTCTCAGTCGCTACTTTGCCTAACACACTTGTCATGGGCATTCCTTTGCTCAAGGCCATGTATGGAGATTTCACACAGAGCCTCATGGTGC AAGTGGTTGTTCTTCAATGTATAATATGGTACACGCTTCTGCTCTTCCTCTTTGAATACAGAGCTGCAACCCTCCTAATCAAAGCCCAATTTCCCGGCCC CACAGCAGCCACCATTTCCAAAATCGAACTCGACGACGACGTCATCTCGCTCGACGGCAGGGATCCACTCCGCACAGAATCAGAAACAGACGGCAACGGA CGCATACGAGTCCGCATCAGACGGTCCACATCTTCGGCTCCAGACTCCGCTCTATCATCCTCCATATGCCTCACTCCTAGACCATCAAACCTCTCCAACG CCGAAGTTTTCTCCGTTAACACCCCTGTACCACTGCACGAATACCATGGTTATAATGGTCATTTCAGTCATGGACCCAACAATGAGATTGTGCTATGTAA TGGTGACTTGGGATTGGCATATCGGTCTGGAACGAGTCCGAGGTTGTCAGGATACGCGTCGTCTGATGCTTACTCACTTCAACCGACACCACGTGCGTCC AACTTTAACGAATTGGACCTAACTAATGCAACGAACACGCCTTTTTGGGTCCGATCTCCGGTCGCCGGTAAAATTTACCGGCAGCCATCTCCGGCGGTTC CTGAAGTCAAGCTAGTCTGGGGTGAGTCGCCAGTAATATGTCCAAATGGCGGCGGCAAAGATGTGCCAGGCAAGGAAATCAGCTTCAGAGACAGTTGTAA AATGCCAGCACCAGAGGAATCGAATTCGAAGGAATCAGTGAGCAACCAAGAAATGCCGCATGCCATTGTCATGATTAGACTTATACTTGTTGTGGTAGGG AGGAAGCTCTCTCGAAATCCAAATACATACTCGAGTGTCTTGGGGCTTCTCTGGTCTTTAGCCTCTTTCAAATGGAATGTGGGAATGCCCAGCTTGGTGA AATATTCAATAAAAATAATTTCAGACGCAGGTCTTGGGATGGCCATGTTCAGTTTAGGGTTGTTCATGGCTCTTCAGCCTCGGATAATTGTATGCGGCAA GAAAAGGGCAACAATGGCAATGGCAATCCGATTCATTTGTGGACCAATCGTAATGTCGACAACTTCGGTCGCTGTTGGAATGAGAGGAGTGCGGCTCCGT GCGGCCATAGTGCAGGCAGCTCTTTCACAAGGGATTGTGCCATTCGTCTTTGCAAGGGAATACGGGTTGCATCCCGATATAATGAGTACAGGGGTAATCT TCGGCATGTTGGTTTCCTTGCCGGTAACCCTCATCTACTATATATTTCTAGGCCTGTGA
AA sequence Show only first row Show all	>Potri.005G187500.1 pacid=42802862 polypeptide=Potri.005G187500.1.p locus=Potri.005G187500 ID=Potri.005G187500.1.v4.1 annot-version=v4.1 MITADDFYKVMCAMVPLYFAMLVAYGSVKWYKIFTPEQCSGINRFVAVFAVPVLSFHFIAQNNPYQMDTKFILADTLSKVLALVLLSVWAVFFNGEFDWL ITLFSVATLPNTLVMGIPLLKAMYGDFTQSLMVQVVVLQCIIWYTLLLFLFEYRAATLLIKAQFPGPTAATISKIELDDDVISLDGRDPLRTESETDGNG RIRVRIRRSTSSAPDSALSSSICLTPRPSNLSNAEVFSVNTPVPLHEYHGYNGHFSHGPNNEIVLCNGDLGLAYRSGTSPRLSGYASSDAYSLQPTPRAS NFNELDLTNATNTPFWVRSPVAGKIYRQPSPAVPEVKLVWGESPVICPNGGGKDVPGKEISFRDSCKMPAPEESNSKESVSNQEMPHAIVMIRLILVVVG RKLSRNPNTYSSVLGLLWSLASFKWNVGMPSLVKYSIKIISDAGLGMAMFSLGLFMALQPRIIVCGKKRATMAMAIRFICGPIVMSTTSVAVGMRGVRLR AAIVQAALSQGIVPFVFAREYGLHPDIMSTGVIFGMLVSLPVTLIYYIFLGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.005G187500 [exp]	0	1	PIN4,Pt-PIN6.2
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.012G067800 [exp]	1.73	0.8683
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.005G101800 [exp]	5.00	0.8564
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	8.48	0.8616
AT3G58650			unknown protein		Potri.010G140900 [exp]	10.24	0.8326
AT1G43580			Sphingomyelin synthetase famil...		Potri.002G066900 [exp]	10.58	0.8215
AT1G09812			unknown protein		Potri.004G224200 [exp]	10.90	0.8493
AT3G06840			unknown protein		Potri.001G162100 [exp]	10.95	0.8686
AT3G56810			unknown protein		Potri.006G026600 [exp]	12.80	0.8702
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.010G031500 [exp]	20.39	0.8492	Pt-NHX1.1
					Potri.017G139650 [exp]	22.24	0.7787

Compare expression of checked genes

Potri.005G187500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.