Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42240 555 / 0 SCPL42 serine carboxypeptidase-like 42 (.1) AT1G43780 516 / 0 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 498 / 2e-174 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 456 / 2e-158 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G33530 286 / 9e-92 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 280 / 2e-89 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT1G61130 246 / 3e-76 SCPL32 serine carboxypeptidase-like 32 (.1) AT3G07990 241 / 3e-74 SCPL27 serine carboxypeptidase-like 27 (.1) AT1G11080 239 / 2e-73 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT5G23210 239 / 2e-73 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071800 [exp] 677 / 0 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1) Potri.006G036500 [exp] 283 / 2e-90 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 283 / 2e-90 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 279 / 5e-89 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 275 / 1e-87 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 262 / 2e-82 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 259 / 4e-81 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 254 / 3e-79 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.007G072300 [exp] 253 / 1e-78 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018924 [exp] 536 / 0 AT5G42240 714 / 0.0 serine carboxypeptidase-like 42 (.1) Lus10028625 [exp] 532 / 0 AT5G42240 713 / 0.0 serine carboxypeptidase-like 42 (.1) Lus10016722 [exp] 281 / 2e-89 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10042287 [exp] 274 / 5e-87 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10036016 [exp] 275 / 1e-86 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 261 / 1e-81 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 251 / 6e-78 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 250 / 9e-78 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 249 / 2e-77 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 247 / 1e-76 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.005G187700.2 pacid=42805084 polypeptide=Potri.005G187700.2.p locus=Potri.005G187700 ID=Potri.005G187700.2.v4.1 annot-version=v4.1 ATGGGTAGGTGTTGGTTTGATGCGGTATTCATTGTTGTGATAAGTTTTTGGTTGTTGGTGAGTGATGATGTGGATGGATATCCAGCTGAGGATCTGGTGC TCAACTTGCCTGGTCAACCAAAGGTTGGCTTCAGGCAGCACGCTGGTTATGTTGATGTGGATGTCAGGAATGTGAGGAGCTTGTTTTACTACTTTCTTGA GGCTGAGAAGGACCCCGACCAGAAGCCCCTAGCTCTCTGGCTCAATGGGGACCCAAGTTGTTCCTCTATTGGTGGAGGAGCCTTCACGAAGTTAGGTCCA TTCTTTCCTAGAGGGGATGGCCGCGACCTTAGAAGAAATTTAATGTCCTGGAACAGAGCATTTAATCTCCTTTTTGTCGAGTCTCTTGCTGGAGTAGGAT GGTCGTACTCAAATACATCTTCTGATTATACTATTGGGGATGCCAAAACAGCCAAGGATATGCACATGTTCTTCTTGAAGTTGTATGATAAGTTCCCAGA ATTCAAATCCCGAGAACTGTTTCTTACCGGAGAAAGTTATGCAGAACATTGCATACCACAGCTTGCCGAGGTTCCTTTGGACCATAATGCACAGTCAACT GATTTTAAGTTCAATATCAAAGGAGTTGCTATTGGTAATCCACTTCTTAGACTTAATCGGGATGTTCTAGCAAAATTCAAAATCTTTTGGTCAGATGGGA TGATTTCTGATGAGATCCGACTTAAGATCATGAATGAATGCGACTTTTATGACTACACCTTTGCAAGTCCGCATAATGTAACTGATACTTGCAATAATGC AATATCTCAATCAAATAGCATCATTGGTCATTACATAAACAAATACGACATGATCCTCGATGTTTGTTATCCATCTATAGTAAATCAAGAACTGCGATTG AGGAAAATGGCTACCAAGATGAGTGTTGGTGTTGACGTATGTATGACCTATGAAAGACGTTTCTATTTCAATCTTCTCGAGGTTCAGAAGGCTCTTTATG CAAATCGAACAAAACTACTCAGTCCCTGGTTTATGTGCAGTAACGTATTACACTACAGTGATACTAATGGTAATATCAACATACTTCCCATTCTAAAAAA AGATCATTCAAAATCATATTCCAGTTTGGGTTTTCAGTCGAGGTACGCGCAAGCTGACCCTGACATCCACGTTAATAAAAAAAAAAAATTCTATTGTACC CCTGCTGGGCTCCCGAACACTCGTCAAAGAACTTGCTCAAGATGTAGACTTCAAGATCACAATCTCACACGGAACTTGGTTTCACAAAGGCCAGTGAGGG CTACTGCCTATATGGTGCCTTATGCACAACCATCAAGAGCTTTGCATTTGTTTAGTTCATTTGTGCGCGGTCGAAGATTGCTGAATACAACACACATTCC AATGGATGATTGA
AA sequence Show only first row Show all	>Potri.005G187700.2 pacid=42805084 polypeptide=Potri.005G187700.2.p locus=Potri.005G187700 ID=Potri.005G187700.2.v4.1 annot-version=v4.1 MGRCWFDAVFIVVISFWLLVSDDVDGYPAEDLVLNLPGQPKVGFRQHAGYVDVDVRNVRSLFYYFLEAEKDPDQKPLALWLNGDPSCSSIGGGAFTKLGP FFPRGDGRDLRRNLMSWNRAFNLLFVESLAGVGWSYSNTSSDYTIGDAKTAKDMHMFFLKLYDKFPEFKSRELFLTGESYAEHCIPQLAEVPLDHNAQST DFKFNIKGVAIGNPLLRLNRDVLAKFKIFWSDGMISDEIRLKIMNECDFYDYTFASPHNVTDTCNNAISQSNSIIGHYINKYDMILDVCYPSIVNQELRL RKMATKMSVGVDVCMTYERRFYFNLLEVQKALYANRTKLLSPWFMCSNVLHYSDTNGNINILPILKKDHSKSYSSLGFQSRYAQADPDIHVNKKKKFYCT PAGLPNTRQRTCSRCRLQDHNLTRNLVSQRPVRATAYMVPYAQPSRALHLFSSFVRGRRLLNTTHIPMDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	6.00	0.7935
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	7.54	0.7715
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	9.74	0.7715
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G055500 [exp]	10.00	0.6742
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	10.67	0.7715	FUCT3.1
					Potri.010G007833 [exp]	13.03	0.7618
					Potri.019G014362 [exp]	25.09	0.6365
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	28.00	0.6622
					Potri.019G002628 [exp]	29.46	0.7313
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Potri.012G072000 [exp]	33.67	0.5869	Pt-LBD27.1

Compare expression of checked genes

Potri.005G187700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.