Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09040 1202 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 502 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 486 / 2e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 471 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G39530 462 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 452 / 2e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 452 / 7e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 452 / 7e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 455 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 449 / 1e-142 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 545 / 3e-177 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 539 / 6e-177 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 522 / 5e-169 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 514 / 8e-167 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 497 / 1e-158 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 483 / 1e-155 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 474 / 2e-152 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 466 / 2e-148 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 457 / 2e-146 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009913 [exp] 1359 / 0 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024199 [exp] 1263 / 0 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 521 / 3e-171 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 510 / 2e-167 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 515 / 9e-166 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 496 / 9e-160 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 486 / 9e-156 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 473 / 8e-152 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 470 / 3e-146 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 457 / 4e-145 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G187800.1 pacid=42804897 polypeptide=Potri.005G187800.1.p locus=Potri.005G187800 ID=Potri.005G187800.1.v4.1 annot-version=v4.1 ATGCTTCGCAAATTCTTCTTCTTGAAAACCTCACCCTCCTCAAACCTACACTCCTTCCATCACCAACTCACATTCTCAGCGATTCCAAACGGGTCAAATC ACCCCTCTCATACCCTTAAACCTCGGATATACACACATATCTTGCAAAACTGTCTGCAAAAAAGCAAGCAAGTCAAAACCCACAGCCTGTTTGATGAAAT ACCTCAAAGATTATCTCAATTTTCAACCACCAATAAAATTATCCATGCCCAGAGCCTCAAACTTGGTTTCTGGTCAAAAGGGGTTCTAGGCAATGTAATC GTTGACCTTTATGCCAAGTGTGCTGATGTGGACTATGCGGAGAGGGCATTCAAACAGCTTGAAGATAAAGATATATTGGCCTGGAACTCAATTCTATCTA TGCATTCAAAACAGGGATTTCCACACTTGGTTGTTAAGTATTTTGGGTTGTTGTGGAATTCTGGTGTGTGGCCAAATGAGTTCACATTTGCGATTGTTTT ATCATCTTGTGCAAGATTGGAGATGGTAAAGTGTGGTAGGCAAGTTCATTGTAATGTTGTTAAGATGGGGTTTGAGTCAATTTCTTATTGTGAGGGTGCT TTAATTGGTATGTATGCCAAATGTAATTTTTTAACTGATGCTCGAAGCATATTTGATGGAGCAGTAGAATTGGATAAAGTTTCTTGGACATCGATGATTG GTGGGTATATTAAAGTTGGTCTGCCTGAGGAGGCAGTGAAAGTGTTCCAGGAGATGGAGAAAGTTGGACAGGAACCAGACCAGGTAGCATTTGTGACTGT CATAAATGCATATGTTGATTTAGGAAGGCTAGACAATGCATCTGATTTGTTTTCCAGGATGCCTAACCGGAATGTTGTGGCTTGGAATTTGATGATTTCA GGTCATGCCAAAGGAGGTTATGGGGTGGAAGCGATTGAGTTTTTCCAAAATATGAGGAAAGCTGGTATTAAATCCACGAGATCCACGTTGGGAAGTGTAT TGAGTGCTATTGCAAGTTTAGCGGCTCTTGACTTTGGCTTGCTAGTTCATGCTGAGGCACTTAAACAGGGGTTACACTCAAATGTTTATGTTGGAAGTTC ACTGGTTAGTATGTATGCTAAGTGTGGGAAGATGGAAGCAGCAAAGAAAGTTTTTGATACTTTAAATGAGCAAAACGTAGTGTTGTGGAATGCAATGCTT GGAGGATATGTGCAGAATGGGTATGCCAATGAAGTCATGGAATTGTTTTTTAATATGAAGAGCTGTGGTTTTTACCCGGATGATTTTACCTATAGCAGCA TTCTGAGTGCCTGTGCTTGCTTAAAATATTTAGATTTGGGCCGTCAATTGCATTCAGTTATTATCAAGAACAAATTTGCATCCAACTTGTTTGTTGGAAA TGCTTTGGTAGATATGTATGCTAAATCTGGTGCTCTTGAGGATGCAAGGCAACAATTTGAGCTGATAAGAAATAGAGACAATGTTTCTTGGAATGTAATT ATTGTTGGATATGTGCAAGAAGAAGATGAAGTTGAGGCATTCCATTTGTTTCGAAGAATGAATTTGCTTGGGATTCTGCCTGATGAAGTGTCTCTGGCTA GTATATTGAGTGCCTGTGCAAGCGTTAGAGGTCTTGAGCAAGGTAAACAGGTGCATTGTCTTTCAGTCAAAACTGGTCAAGAAACAAAGCTTTACAGTGG AAGTTCCCTCATCGACATGTATGCCAAGTGTGGGGCTATTGATTCTGCACACAAAATTCTTGCTTGCATGCCTGAGCGAAGTGTGGTCTCCATGAATGCA CTGATTGCAGGATATGCTCAAATTAATTTGGAACAGGCAGTAAATCTGTTTCGAGATATGCTAGTTGAAGGAATAAACTCCACTGAAATAACATTTGCAA GCCTTTTAGATGCATGTCATGAGCAACAGAAGTTGAATCTAGGAAGGCAAATCCACTCTCTTATTTTAAAGATGGGCCTTCAGCTTGATGATGAATTCTT GGGTGTCTCTCTCTTAGGCATGTACATGAACTCCCTGAGAACAACAGATGCAAGTGTTCTCTTCTCAGAGTTTTCAAATCCAAAGAGTGCTGTAGTGTGG ACTGCTATGATTTCAGGACTTAGTCAAAATGATTGCAGTGTGGGGGCTTTACAACTCTATAAAGAAATGCGCAGCTGCAATGTATTACCTGACCAAGCTA CATTTGTTAGTGCCCTCAGAGCATGTGCTGTCGTATCTTCTATAAAAGATGGTAGAGAGACTCATTCTCTGATTTTCCATACCGGATTTGACTCAGATGA GTTGACGAGTAGTGCCCTTGTAGATATGTATGCCAAATGTGGGGATGTAAAGAGCTCCATGCAAGTTTTTAAGGAAATGAGCAGAAAAAAAGACGTTATT TCTTGGAACTCAATGATAGTTGGATTTGCTAAAAATGGGTATGCAGAAGATGCCCTAAGAGTCTTCGATGAGATGAAACAATCACATGTAACACCAGATG ATGTCACTTTTCTTGGTGTCCTCACTGCGTGTAGTCATTCAGGGAGGGTATCCGAAGGGCGTCTGATTTTTGACATGATGGTTAACTTATATGGGATGCA GCCTAGAGCAGATCATTGTGCCTGCATGGTTGATCTTCTAGGCAGATGGGGTTCTCTAAAAGAAGCTGAAGAGTTCATTAACAAACTTAATTTTGAACCT GATGCTAAGGTTTGGGCTACAATGCTTGGGGCCTGCAGAATACATGGAGATGACATCAGGGGCCAACAAGCTGCTGAAAAACTCATTGAGCTTGAACCAC AAAACTCTTCACCCTATGTACTGCTTTCTAACATTTATGCCGCATCAGGAAACTGGGATGAGGTCAATACTTTGAGGAGGGAAATGAGAGAAAAAGGAGT GAAGAAGTTGCCTGGGTGTAGCTGGATTGTAGTTGGACAGGAGACGAACATGTTTGTGGCAGGAGACAAATCTCATCATAGCGCATCAGAAATCGATGCA ATTTTGAAAGATTTGACACCGCTGATGAGAGAAAATGATTATGTTGTTCAGCTTGATTTTTTTGGCGATGATGAAGAATGA
AA sequence Show only first row Show all	>Potri.005G187800.1 pacid=42804897 polypeptide=Potri.005G187800.1.p locus=Potri.005G187800 ID=Potri.005G187800.1.v4.1 annot-version=v4.1 MLRKFFFLKTSPSSNLHSFHHQLTFSAIPNGSNHPSHTLKPRIYTHILQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSKGVLGNVI VDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGA LIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMIS GHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAML GGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGRQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVI IVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNA LIAGYAQINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVW TAMISGLSQNDCSVGALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGRETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVI SWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEP DAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHSASEIDA ILKDLTPLMRENDYVVQLDFFGDDEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	0	1
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	1.00	0.8578
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	1.41	0.8557
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	1.73	0.8372
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	4.00	0.8196
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Potri.014G198300 [exp]	6.00	0.8188
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	7.34	0.8261
AT2G46050			Pentatricopeptide repeat (PPR-...		Potri.014G087100 [exp]	7.74	0.8181
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	8.36	0.8322
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	10.19	0.8061
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	12.40	0.8154

Compare expression of checked genes

Potri.005G187800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.