Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	VPS45.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77140 999 / 0 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT1G02010 131 / 4e-32 SEC1A secretory 1A (.1.2) AT4G12120 119 / 6e-28 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G12360 117 / 2e-27 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT2G17980 93 / 1e-19 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1) AT3G54860 58 / 1e-08 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071600 [exp] 1081 / 0 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.014G069300 [exp] 116 / 4e-27 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.003G115800 [exp] 110 / 3e-25 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 110 / 3e-25 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.004G204400 [exp] 74 / 1e-13 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 72 / 5e-13 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.010G226600 [exp] 57 / 2e-08 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 55 / 1e-07 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028622 [exp] 1024 / 0 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10018921 [exp] 1021 / 0 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10015870 [exp] 116 / 4e-27 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 108 / 9e-25 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10024558 [exp] 106 / 7e-24 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10032196 [exp] 103 / 6e-23 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10023936 [exp] 78 / 8e-15 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 77 / 2e-14 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10037969 [exp] 48 / 2e-05 AT3G54860 650 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10038698 [exp] 45 / 0.0001 AT3G54860 654 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [poplar] [flax] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Potri.005G188000.1 pacid=42803374 polypeptide=Potri.005G188000.1.p locus=Potri.005G188000 ID=Potri.005G188000.1.v4.1 annot-version=v4.1 ATGGTGCTAGTATCCGCTGCACGTGATTACGTAAACCGGATGTTGCAGGACATCTCCGGTATGAAGGTTCTCATTCTCGATTCCCAAACGGTTAGTATTG TAAGTGTTGTGTATTCACAATCAGAATTACTACAAAAGGAGGTATTTTTGGTAGAATTGGTAGATTCTATATCGAAGTCGAAAGAATCAATGTCGCATCT TAAAGCAGTATACTTCCTTCGCCCAACATTGGAGAATATTCAGCATTTGCGGCGTCAGCTGGCTAATCCTAGATTCGGAGAGAGTCATTTATTTTTCTCC AACATGTTGAAGGATACTCAGATTCATATATTAGCTGATTCGGATGAACAGGAAGTGGTGCAGCAAGTTCAGGAGTATTATGCAGACTTTGTTGCAATTG ATCCTTATCATTTCACTTTGAACATCCCTTCAAATCACATGTATATGCTTCCAGCGGTTGTAGATCCTCCTGGTTTGCAACAGTTCTGTGATAGAATTGT TGATGGCATATCAACAGTCTTTTTGGCATTGAAACGAAGACCTGTTATTCGATATCAAAGGACCTCTGATATTGCAAAAAGGATAGCACAGGAAACATCA AAGCTGATGTACCAGCAGGAAAGTGGCCTTTTTGATTTCAGACGTACAGAGATTTCTCCTTTGTTGCTTATAGTTGATCGAAGGGATGACCCTGTTACCC CATTATTAAACCAATGGACATATCAGGCTATGGTTCATGAATTGATAGGTATTCATGATAACAAAGTGGATTTGAGTGGTACTGGAAAATTACCCAAAGA CCAGCAGGAGGTTGTATTGTCATCAGAGCAAGATGCCTTCTTCAAAGCTAATATGTATGAGAACTTTGGAGATATTGGAATGAGCATCAAGAGGATGGTG GATGACTTTCAGCAAGTTGCAAAAAGTAACCAAAATATCCAAACAATAGAAGACATGGCCAAGTTTGTTGACAGTTACCCTGAGTACAGAAAAATGCACG GCAATGTTTCAAAGCATGTGACATTGGTCACAGAAATGAGCAAGATAGTTGGAGAGCGAAGGCTGATGTTAGTTTCAGAAAGGGAACAGGATTTGGCTTG CAATGGTGGGCAAGTGGCTGCATTTGAGGCAGTGACAAATCTTCTAAACAATGAAAGTGTTTCTGATATTGACCGACTACACCTGGTAATGTTATATGCA TTGCGCTATGAGAAGGAGAGCCCTGTTCAATTAATGCAGCTTTTTAACAAACTGGCTTCTCAATCTCCCAAGTACAAGCCTGGGCTTGTCCAATTCCTCC TGAAGCAAGCAGGTGTGGATAAGCGTGCCGGGGATCTTTATGGGAACCGAGATCTTCTGAACATTGCTCGTAACATGGCTCGTGGTCTTAAGGGGGTTGA AAATGTATACACCCAGCACCAGCCTCTTCTGTTCCAAACTATGGAAAGCATAATCAAGGGGCGGTTGAGAGATGTGGACTACCCATTTGTTGGAAATCAC TTTCAACAGGGAAGGCCGCAAGATGTGGTTATTTTCATTGTTGGTGGAACAACATATGAGGAGTCACGCTCTGTTGCTCTCCAAAATGCCAGCAATTCTG GAACTCGTTTTATCCTTGGTGGTTCTGTAGTTCTCAATTCTAAGAGGTTCCTGAAGGACCTGGAAGAAGCTCAGAGAATAGCTAAATCCAGCACCAACGT AGTTTGA
AA sequence Show only first row Show all	>Potri.005G188000.1 pacid=42803374 polypeptide=Potri.005G188000.1.p locus=Potri.005G188000 ID=Potri.005G188000.1.v4.1 annot-version=v4.1 MVLVSAARDYVNRMLQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISKSKESMSHLKAVYFLRPTLENIQHLRRQLANPRFGESHLFFS NMLKDTQIHILADSDEQEVVQQVQEYYADFVAIDPYHFTLNIPSNHMYMLPAVVDPPGLQQFCDRIVDGISTVFLALKRRPVIRYQRTSDIAKRIAQETS KLMYQQESGLFDFRRTEISPLLLIVDRRDDPVTPLLNQWTYQAMVHELIGIHDNKVDLSGTGKLPKDQQEVVLSSEQDAFFKANMYENFGDIGMSIKRMV DDFQQVAKSNQNIQTIEDMAKFVDSYPEYRKMHGNVSKHVTLVTEMSKIVGERRLMLVSEREQDLACNGGQVAAFEAVTNLLNNESVSDIDRLHLVMLYA LRYEKESPVQLMQLFNKLASQSPKYKPGLVQFLLKQAGVDKRAGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFVGNH FQQGRPQDVVIFIVGGTTYEESRSVALQNASNSGTRFILGGSVVLNSKRFLKDLEEAQRIAKSSTNVV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.005G188000 [exp]	0	1	VPS45.1
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.018G108850 [exp]	7.48	0.7583
AT5G56020			Got1/Sft2-like vescicle transp...		Potri.011G164900 [exp]	10.24	0.7966
AT5G56350			Pyruvate kinase family protein...		Potri.003G223100 [exp]	10.58	0.7140
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	16.24	0.7206
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	20.04	0.7878
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	22.58	0.7277
AT4G09810			Nucleotide-sugar transporter f...		Potri.002G064700 [exp]	34.20	0.7586
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	44.09	0.7152	EXP2.10
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	48.06	0.7628
AT4G30993			Calcineurin-like metallo-phosp...		Potri.018G110300 [exp]	48.21	0.7562

Compare expression of checked genes

Potri.005G188000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.