Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77160 169 / 4e-52 Protein of unknown function (DUF506) (.1) AT1G77145 157 / 2e-47 Protein of unknown function (DUF506) (.1) AT2G38820 135 / 2e-38 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 134 / 2e-37 Protein of unknown function (DUF506) (.1) AT3G22970 120 / 6e-33 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G54550 119 / 3e-32 Protein of unknown function (DUF506) (.1) AT3G07350 118 / 6e-32 Protein of unknown function (DUF506) (.1) AT3G25240 113 / 3e-30 Protein of unknown function (DUF506) (.1) AT4G32480 112 / 8e-30 Protein of unknown function (DUF506) (.1) AT2G39650 111 / 2e-29 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071500 [exp] 380 / 2e-135 AT1G77160 155 / 2e-46 Protein of unknown function (DUF506) (.1) Potri.005G058200 [exp] 214 / 1e-69 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.007G109700 [exp] 212 / 8e-69 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 134 / 5e-37 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 131 / 4e-36 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G001400 [exp] 129 / 7e-36 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.008G159800 [exp] 127 / 2e-34 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 125 / 9e-34 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.019G099600 [exp] 123 / 1e-33 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006634 [exp] 133 / 1e-36 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 132 / 1e-36 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 132 / 2e-36 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 130 / 7e-36 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 130 / 3e-35 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 128 / 6e-35 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10033683 [exp] 118 / 9e-32 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 117 / 3e-31 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10017723 [exp] 116 / 3e-31 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 114 / 4e-31 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [poplar] [flax] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G188100.1 pacid=42804031 polypeptide=Potri.005G188100.1.p locus=Potri.005G188100 ID=Potri.005G188100.1.v4.1 annot-version=v4.1 ATGGGTAGCCTTGGAGAGGAAGAGCTTGTCGAAATGGTCAGAGACTACATGGAATCAGATCAGTCAACTACTCCCGTTTCACTGAGAACTTCAAAGGCTC TCCCCAGAAAGTCTCAATCCAGTTTGCAGGATATTATTTTGGAGGCGAAAGATACTGAGACTCGGGTTCTTGACAAAGTCTTGATGTATGTTAGAGGTAT GGGAGAACCCAGTAGTCTCAAGAAATGGGTGGTCATGAGATTGCAAATGGATGGTTATGAAGCTTCTCTATGTAAAACCTCTTGGGCTTCCACTTTTGGC CACAGAGTTTTCCACTTTACAGGTGATTATGAGTACATAGATGTGATGATAATGGACACCAACATTAGCAACAAGGCAACAAGGCTGATACTGGATATGG ATTTTAGGTCTCAGTTTGAGTTAGCAAGGCCTACACAGACATACAAAGAGCTTATTAACACGCTTCCTTCAGTCTTCATCGGCACCGAAGAGAGACTTGA CAAGATAATCTCGCTGTTATGCTCAGCTGCTAAAGAATCATTTAAAGAAAAGGGTCTCCATACTCCTCCATGGAGGAAAGCCAAGTACATGCAGTCAAAA TGGCTCTCCAAGAACTGCAAAAAAGTCGCAGTCATGCACAGCCCTGAGCTGGTAGACTTGGATGCAAGAGAAGAGGGAAACAGCACCGCATGTTGTTCCT CCATCTTTTAG
AA sequence Show only first row Show all	>Potri.005G188100.1 pacid=42804031 polypeptide=Potri.005G188100.1.p locus=Potri.005G188100 ID=Potri.005G188100.1.v4.1 annot-version=v4.1 MGSLGEEELVEMVRDYMESDQSTTPVSLRTSKALPRKSQSSLQDIILEAKDTETRVLDKVLMYVRGMGEPSSLKKWVVMRLQMDGYEASLCKTSWASTFG HRVFHFTGDYEYIDVMIMDTNISNKATRLILDMDFRSQFELARPTQTYKELINTLPSVFIGTEERLDKIISLLCSAAKESFKEKGLHTPPWRKAKYMQSK WLSKNCKKVAVMHSPELVDLDAREEGNSTACCSSIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77160			Protein of unknown function (D...		Potri.005G188100 [exp]	0	1
AT2G19330		PIRL6	plant intracellular ras group-...		Potri.018G139700 [exp]	4.00	0.9540
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	4.35	0.9724
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	5.47	0.9693
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	9.32	0.9701
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	10.24	0.9658
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	12.00	0.9699
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	13.03	0.9620
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	14.49	0.9663
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	14.96	0.9652
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.013G056700 [exp]	17.32	0.9432

Compare expression of checked genes

Potri.005G188100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.