Plant FIBer expression Database

Potri.005G188300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78780 251 / 3e-84 pathogenesis-related family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G188400
[exp]
476 / 3e-173 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389800
[exp]
262 / 1e-88 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4)
Potri.011G108900
[exp]
260 / 8e-88 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389400
[exp]
259 / 2e-87 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018919
[exp]
339 / 5e-119 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4)
Lus10029763
[exp]
335 / 2e-117 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4)
Lus10037316
[exp]
241 / 7e-80 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4)
Lus10039018
[exp]
218 / 3e-71 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4)
Lus10035732
[exp]
157 / 3e-48 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4)
Lus10042792
[exp]
144 / 7e-44 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4)
Lus10027315
[exp]
111 / 7e-31 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4)
Lus10028620
[exp]
79 / 3e-19 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.005G188300.1 pacid=42803628 polypeptide=Potri.005G188300.1.p locus=Potri.005G188300 ID=Potri.005G188300.1.v4.1 annot-version=v4.1
ATGGCAACTTCAGGCGTTAGAGAAGACAAATACCGTACTTTCTTGTATGGAGAAGGAGAGAAGAACACCAAATGGAGGTATGGTTCACCTCCAAACTATG
ATGATGTCAACAAACTCTTTGAAGAAGGCAGGACTAAGGTATGGCCATCTGGATCACTCGAAGAAAAAGTGCAGAACCTAGTAAAGACATGGGAGATGGA
GATGTTCCATAAGACATGCTTTGATGATTATAAATCAGTTGATCCCAAGAACTATACTTTTAGCCTAAATGGAAGGAAACCTGTAACTTTGGAAGAAACG
CGCAAACTTGGCGGAGGCTACAACACCTTTTTGCAGACTACCTTACCGGAGAAGTTCCGGGCCTATAACCCTGATGAAGAAACTGTGGATTCAGCTCAGG
TGGCTTTTACAACAGTATTCCCTCGTGGGTTTGCTTTGGAGGTTCTCCAAGTTTATTCAGGGCCACCGGTGATTGTGTACAAGTTCAGGCACTGGGGTTA
CATGGAAGGTCCGTTCAAGGGCCATGCTGCAACTGGGGAATTAGTAGAACTCTATGGAATGTCTATTTTTGAGGTGGATGAACACATGAAGGTTGTGAAG
GTAGAGTTCTTTATTGACCGTGGAGAACTGCTTGGAGGTCTTATGAAAGGTGCTACCTTGGACGGCTCAACAGCAGAGGCAGCTTCAACCTGCCCTTTCT
TGAGGGGCACAGGGTAG
AA sequence
>Potri.005G188300.1 pacid=42803628 polypeptide=Potri.005G188300.1.p locus=Potri.005G188300 ID=Potri.005G188300.1.v4.1 annot-version=v4.1
MATSGVREDKYRTFLYGEGEKNTKWRYGSPPNYDDVNKLFEEGRTKVWPSGSLEEKVQNLVKTWEMEMFHKTCFDDYKSVDPKNYTFSLNGRKPVTLEET
RKLGGGYNTFLQTTLPEKFRAYNPDEETVDSAQVAFTTVFPRGFALEVLQVYSGPPVIVYKFRHWGYMEGPFKGHAATGELVELYGMSIFEVDEHMKVVK
VEFFIDRGELLGGLMKGATLDGSTAEAASTCPFLRGTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78780 pathogenesis-related family pr... Potri.005G188300
[exp]
0 1
AT1G05200 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) Potri.011G063000
[exp]
1.73 0.9963
Potri.006G106150
[exp]
2.00 0.9971
AT5G06740 Concanavalin A-like lectin pro... Potri.004G209300
[exp]
2.23 0.9975
AT4G27290 S-locus lectin protein kinase ... Potri.001G412400
[exp]
5.47 0.9956
AT4G14746 unknown protein Potri.013G039300
[exp]
5.74 0.9952 Pt-MTN26.2
AT1G68840 AP2_ERF EDF2, RAV2, RAP... TEMPRANILLO 2, RELATED TO AP2 ... Potri.003G010700
[exp]
10.58 0.9959
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.001G375200
[exp]
11.91 0.9850
AT4G27270 Quinone reductase family prote... Potri.011G129400
[exp]
12.60 0.9919 FQR1.2
Potri.001G091400
[exp]
13.03 0.9957
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.001G374600
[exp]
13.19 0.9957

Potri.005G188300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.