Plant FIBer expression Database

Pt-PR.3 (Potri.005G188400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PR.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G188300
[exp]
476 / 3e-173 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389800
[exp]
258 / 4e-87 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389400
[exp]
256 / 2e-86 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4)
Potri.011G108900
[exp]
256 / 3e-86 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018919
[exp]
338 / 6e-119 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4)
Lus10029763
[exp]
338 / 7e-119 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4)
Lus10037316
[exp]
241 / 3e-80 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4)
Lus10039018
[exp]
219 / 7e-72 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4)
Lus10035732
[exp]
159 / 9e-49 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4)
Lus10042792
[exp]
146 / 1e-44 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4)
Lus10027315
[exp]
114 / 8e-32 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4)
Lus10028620
[exp]
79 / 6e-19 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.005G188400.2 pacid=42805323 polypeptide=Potri.005G188400.2.p locus=Potri.005G188400 ID=Potri.005G188400.2.v4.1 annot-version=v4.1
ATGGCAACTTCAGGCGTTAGAGAAGACAAATACCGTACTTTCTTGTATGGAGAAGGAGAGAAGAACACCAAATGGAGGTTTGGTTCACCTCCAAACTATG
ATATTGTCAACAAACTCTTTGAAGAAGGCAGGACTAAGGTATGGCCATCTGGATCACTCGAAGAAAAAGTGCAGAACCTAGTAAAGACATGGGAGATGGA
GATGTTCCATAAGACATGCTTTGATGATTATAAATCAGTTGATCCCAAGAACTATACTTTTAGCCTAAATGGAAGGAAACCTGTAACTTTGGAAGAAAAG
CGCAAACTTGGCGGAGGCTACAACACCTTTTTGCAGACTACCTTACCGGAGAAGTTCCGGGCTTATAACCCTGCTGAAGAAACTGTGGATTCATCTCATG
TGGCTTTTACAACAGCATTCCCTCGTGGGCTTGCTTTGGAGGTTCTCCAAGTTTATTCAGGGCCACCGGTGATTGTGTACAAGTTCAGGCACTGGGGTTA
CATGGAAGGTCCGTTCAAGGGCCATGCTGCAACTGGGGAAATAGTAGAACTCTATGGAATGTCTATTTTTGAGGTGGATGAACACATGAAGGTTGTGAAG
GTAGAGTTCTTTATTGACCGTGGAGAACTGCTTGGAGGTCTTATGAAAGGTGCTACCTTGGACGGCTCAACAGCAGAGGCAGCTTCAACCTGCCCTTTCT
TGAGGGGCACAGGGTAG
AA sequence
>Potri.005G188400.2 pacid=42805323 polypeptide=Potri.005G188400.2.p locus=Potri.005G188400 ID=Potri.005G188400.2.v4.1 annot-version=v4.1
MATSGVREDKYRTFLYGEGEKNTKWRFGSPPNYDIVNKLFEEGRTKVWPSGSLEEKVQNLVKTWEMEMFHKTCFDDYKSVDPKNYTFSLNGRKPVTLEEK
RKLGGGYNTFLQTTLPEKFRAYNPAEETVDSSHVAFTTAFPRGLALEVLQVYSGPPVIVYKFRHWGYMEGPFKGHAATGEIVELYGMSIFEVDEHMKVVK
VEFFIDRGELLGGLMKGATLDGSTAEAASTCPFLRGTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78780 pathogenesis-related family pr... Potri.005G188400
[exp]
0 1 Pt-PR.3
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.008G213100
[exp]
1.00 0.9884
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Potri.017G050400
[exp]
3.00 0.9793
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G133951
[exp]
6.32 0.9786
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G033400
[exp]
7.48 0.9755
Potri.010G218400
[exp]
10.00 0.9825
AT3G09020 alpha 1,4-glycosyltransferase ... Potri.016G114200
[exp]
13.26 0.9685
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.008G174900
[exp]
13.52 0.9599
AT1G16130 WAKL2 wall associated kinase-like 2 ... Potri.001G039900
[exp]
14.28 0.9620
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.001G375200
[exp]
15.19 0.9757
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G033600
[exp]
15.49 0.9662

Potri.005G188400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.