Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 419 / 6e-139 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT1G65610 400 / 2e-131 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT4G24260 395 / 1e-129 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G75680 307 / 6e-97 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT4G11050 309 / 1e-96 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G19940 303 / 2e-95 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G64390 295 / 3e-91 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT1G70710 291 / 5e-91 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT2G32990 290 / 1e-90 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G23210 289 / 2e-90 ATGH9B6 glycosyl hydrolase 9B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079500 [exp] 452 / 8e-152 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.010G177300 [exp] 448 / 2e-150 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.003G151700 [exp] 431 / 8e-144 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 427 / 4e-142 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.003G139600 [exp] 303 / 4e-94 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 297 / 4e-93 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 298 / 2e-92 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G083200 [exp] 290 / 5e-91 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.010G109200 [exp] 289 / 2e-90 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018918 [exp] 803 / 0 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 791 / 0 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 431 / 1e-143 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10026275 [exp] 430 / 3e-143 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10012162 [exp] 427 / 6e-142 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 340 / 6e-110 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 328 / 6e-104 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10033156 [exp] 312 / 6e-99 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10034515 [exp] 309 / 1e-97 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10001833 [exp] 308 / 2e-96 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.005G188500.2 pacid=42804764 polypeptide=Potri.005G188502.1.p locus=Potri.005G188500 ID=Potri.005G188500.2.v4.1 annot-version=v4.1 ATGATTAATTCTATAGGCTCGCCTACTCATACCTCTGCGTCGCACGAAGATCGTAACTATGCATCTGATATAGATCATCAACCTGTGAGGTTTGTTCATA CAATTTCAGAGGCAGGCAGGCTTCTACCTTCAGCAAGCCAATGGAACTCAATTGAACTTGATTTTCATCTTGCTCCGCAATCAAACACTACCTATGATTC ACTTCCTTCTCGATACTCTAAATCCTTCGACTACGAACTTGTTATAACAGATAAGAAATACTTCAAGCGCTTTGTTTATGTCTCCATCCTCATAGTTTTT GTTGTCCTAGCAATTGTTCTACTAGTGCAATTTCTGCCTCATAAGCACAAGCACCATGGAAAATCAAAGAATATCACGCTCGCATTAAACCAAGCTTTGA TGTTCTTCGATGCTCAAAAGTCTGGGAATTATCCAAGCAATAGTCCTGTCAAATTTCGAGGAAGTTCAGGGTTGCAAGATGGGAATACGAGTAATCCACC TGCAGACCTCAAGGGCGGCTTTTATGATTCCGGAAAAAATATAAAGTTCAGTTTCCCCACAGCCTATACCATTACCCTCTTGAGCTGGACTGTCATTGAA TATCATGATAAATATGACAGCATAGGTGAGCTTGATCATGTCAAGGACATTATCAGATGGGGCAGTGATTACTTGCTAAAAATCTTTGATCCTCCAAATT CAACTACAGCTCCCATAATAATATATTCTCAGGTTGGAAGTAATCATACAAACGGTTATAATGATGTAACCTGCTGGCAAAGACCAGAAGACATGAACTA TACGAGACCTGTTTCAGTTTGCAATGAAACAGCTTCAGATCTAGCAGGAGAAATTATGGCAGCATTATCGGCAGCATCAATAGTTTTCAAAGATGACACT GGTTACTCGATAAAACTAATCCAGTCAGCAGAGAAGTTATTTGAGGTTGCGACGAAGAATGACACGGGTCACCATCAAGGCACTTACACTGCGGTTGAAG ATTGTGGAGGAGAGGCAAGAATGTATTATGATTCATCTGGTTACCAAGATGAATTGATATGGGGAGGAACTTGGTTGTTCTTTGCTACTGGAAATACTTC TTATCTTGGATATGCTACTAGTAATTTTAGTGCAGCAGAGGGAGAAGAAACAGCGTCAGAGCTAGGTGTTTTCTATTGGAACAACAAGCTTACTGCTAAT GCGGTCTTGCTGACAAGACTTCGATACTTTCATGACCTTGGCTATCCCTACGAAGTTGGTTTAGGATCTTCTTCGAATAAGATTGATCTGCTCATTTGTT CTTATCTTTCTCGCGAAATCTACAGCAGAACACCAGGTGGGTTGATACTCCTGAGGCCAGATCATGGTGAACCACTCCAGTTTGCTGCGACAGCATCTTT CCTCGGAAAATTATACAGTGACTACCTTGAACTTCTACGTAGATCAGGTGTAAGTTGCAGCAGTAAGTTTTACTCTGTGGAGATGTTGCGAGAATTCTCC ATCTCTCAGGTTAATTACATACTAGGAGATAATCCAATGAAGATGAGCTACATGGTTGGCTTTGGAAACAAATATCCAACCCATGTCCATCACAGGGCTG CATCAATCCCTTGGGATGATCAGCATTACTCTTGTCCAGAGGGAGATAGATGGTTATACTCTACGGATCCAAATCCAAATATTCTTTATGGAGCCATGGT TGCAGGGCCAGACAAGTTTGACAATTTTTTGGATGACAGGGACAAGCCATGGTTCACCGAGCCAACCATAGCGAGTAATGCAGGTCTAGTTGCAGCACTT ATAGCGCTTCATGATCCACCATACAAGTCTTCTGATTCAAATGGCACTAATCTGGGAATTGACCTGACTGGTATCTTTAAAAACCTTCAATTAGTTCCAC CAGGTACTTGA
AA sequence Show only first row Show all	>Potri.005G188500.2 pacid=42804764 polypeptide=Potri.005G188502.1.p locus=Potri.005G188500 ID=Potri.005G188500.2.v4.1 annot-version=v4.1 MINSIGSPTHTSASHEDRNYASDIDHQPVRFVHTISEAGRLLPSASQWNSIELDFHLAPQSNTTYDSLPSRYSKSFDYELVITDKKYFKRFVYVSILIVF VVLAIVLLVQFLPHKHKHHGKSKNITLALNQALMFFDAQKSGNYPSNSPVKFRGSSGLQDGNTSNPPADLKGGFYDSGKNIKFSFPTAYTITLLSWTVIE YHDKYDSIGELDHVKDIIRWGSDYLLKIFDPPNSTTAPIIIYSQVGSNHTNGYNDVTCWQRPEDMNYTRPVSVCNETASDLAGEIMAALSAASIVFKDDT GYSIKLIQSAEKLFEVATKNDTGHHQGTYTAVEDCGGEARMYYDSSGYQDELIWGGTWLFFATGNTSYLGYATSNFSAAEGEETASELGVFYWNNKLTAN AVLLTRLRYFHDLGYPYEVGLGSSSNKIDLLICSYLSREIYSRTPGGLILLRPDHGEPLQFAATASFLGKLYSDYLELLRRSGVSCSSKFYSVEMLREFS ISQVNYILGDNPMKMSYMVGFGNKYPTHVHHRAASIPWDDQHYSCPEGDRWLYSTDPNPNILYGAMVAGPDKFDNFLDDRDKPWFTEPTIASNAGLVAAL IALHDPPYKSSDSNGTNLGIDLTGIFKNLQLVPPGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.005G188500 [exp]	0	1
					Potri.001G151150 [exp]	7.61	0.9366
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.015G036100 [exp]	12.96	0.8855
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	19.97	0.9256
					Potri.015G061500 [exp]	24.79	0.9029
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	27.92	0.9223
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.004G183800 [exp]	28.80	0.9252	CYP87D11
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Potri.001G122100 [exp]	31.46	0.9058
AT4G14746			unknown protein		Potri.003G057700 [exp]	32.40	0.9202
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.018G102200 [exp]	32.49	0.9201
AT1G56140			Leucine-rich repeat transmembr...		Potri.018G132900 [exp]	37.94	0.9153

Compare expression of checked genes

Potri.005G188500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.