Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21360 259 / 4e-88 GLTP2 glycolipid transfer protein 2 (.1) AT3G21260 247 / 4e-83 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) AT2G33470 131 / 4e-38 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT2G34690 59 / 2e-10 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071100 [exp] 400 / 6e-144 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1) Potri.010G069600 [exp] 150 / 2e-45 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 134 / 4e-39 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 131 / 4e-38 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.006G051800 [exp] 57 / 4e-10 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Potri.016G055300 [exp] 49 / 6e-07 AT2G34690 295 / 1e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018917 [exp] 295 / 7e-102 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 267 / 7e-91 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10029765 [exp] 250 / 7e-85 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10042793 [exp] 262 / 9e-85 AT1G21370 486 / 2e-170 unknown protein Lus10021169 [exp] 139 / 4e-41 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10011806 [exp] 134 / 4e-39 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 131 / 2e-37 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 99 / 2e-25 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10038537 [exp] 50 / 6e-07 AT2G34690 279 / 5e-94 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10023267 [exp] 48 / 2e-06 AT2G34690 293 / 5e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [poplar] [flax] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Potri.005G188600.1 pacid=42802356 polypeptide=Potri.005G188600.1.p locus=Potri.005G188600 ID=Potri.005G188600.1.v4.1 annot-version=v4.1 ATGAAAAGGACGAGAGAAATGGAGAAAGGATCAGAGATACAGTCTGCAATTGAAGAACTGTCGATGCTGATCGAACTCAAGCCCACAGGTGACAATCTTG ATAGGACTACTACTGTTCATATACCCACAAGGCCCTTTTTAAACGTCTGCAACCTTGTTATTCAGGTTCTTGATAAGATAGGCCCAACAATGGCAGTTTT GAGACAAGATATCAATCAGAATATTCAGAGATTGGAGATGCTATGTAATTCTGATCCTTCAATATACTCCAATTTGGTCGCGATTTTAAAGAAAGAGGCC GATGAAGGCAATGCAAGAAAGGGTGCCAGCTGCAGTAAAGCCTTTGTGTGGCTTGCCAGATCCTTGGATTTTACGGGTGCTTTGTTACAAAGATTAGTGG CGGATCCTGGTCAGAAAATGGAGCAACTCGTGGAGGAATCTTACAGCATCACTTTAAAGCCTTGGCATGGTTGGATTTCAACAGCTGCTTATAAAGTTTC TCTTAAATTACTGCCTGATAATAAAACGTTCATTAATCTGCTCATGCCGAAAGATGAAACCTACGACAACCTAAATGAGCATGTGCAAACATTCATCTCA TTACTTGTACCTTTTCTAGAAGAGATCCACTCTATTCTGATACTATATGGATTGGATAGGCTGAAGTCTACTTAG
AA sequence Show only first row Show all	>Potri.005G188600.1 pacid=42802356 polypeptide=Potri.005G188600.1.p locus=Potri.005G188600 ID=Potri.005G188600.1.v4.1 annot-version=v4.1 MKRTREMEKGSEIQSAIEELSMLIELKPTGDNLDRTTTVHIPTRPFLNVCNLVIQVLDKIGPTMAVLRQDINQNIQRLEMLCNSDPSIYSNLVAILKKEA DEGNARKGASCSKAFVWLARSLDFTGALLQRLVADPGQKMEQLVEESYSITLKPWHGWISTAAYKVSLKLLPDNKTFINLLMPKDETYDNLNEHVQTFIS LLVPFLEEIHSILILYGLDRLKST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.005G188600 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.007G009400 [exp]	5.00	0.9567
AT2G45220			Plant invertase/pectin methyle...		Potri.014G067100 [exp]	9.53	0.9383	Pt-PE9.1
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	12.64	0.9429
AT1G61590			Protein kinase superfamily pro...		Potri.001G128500 [exp]	13.63	0.9415
AT3G58000			VQ motif-containing protein (....		Potri.009G024200 [exp]	14.14	0.9380
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246500 [exp]	16.43	0.9384
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	16.97	0.9407
AT3G07870			F-box and associated interacti...		Potri.008G215901 [exp]	18.00	0.9101
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	19.10	0.9391
AT3G04440			Plasma-membrane choline transp...		Potri.019G040500 [exp]	22.24	0.9192

Compare expression of checked genes

Potri.005G188600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.