Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48940 1012 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 1010 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 878 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 845 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 777 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 604 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 601 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 592 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 569 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 565 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070900 [exp] 1800 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 1000 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 993 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G467300 [exp] 890 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 877 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 860 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 845 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G198000 [exp] 796 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 769 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028612 [exp] 1305 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 1284 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011756 [exp] 984 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 938 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 860 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017782 [exp] 796 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 794 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038930 [exp] 560 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10039641 [exp] 551 / 6e-179 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 549 / 2e-178 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G188700.1 pacid=42804808 polypeptide=Potri.005G188700.1.p locus=Potri.005G188700 ID=Potri.005G188700.1.v4.1 annot-version=v4.1 ATGATGTCAAGCAATGCTATCACAATTTTTCTCTTGTTTCTCAACATCTCTATCTTTCCAGCCATCTCTGCCTTGAACCAAGAAGGCCACTCTCTGCTTT CATGGCTTTCAACCTTTAACTCTTCTTTTTCATCTACTTTCTTCTCAACATGGGATCCAAGCCACCAAAATCCATGCAAATGGGATTATGTAAGATGTTC TAGCAATGGTTTTGTCTCAGAAATAATAATCACCTCCATCAACCTTCCTACCGGCTTCCCTACCCAGCTTCTCTCCTTTAACCATCTCACAACCCTCGTC CTTTCAAATGGAAATCTTACTGGAGAAATTCCTCGGTCGATAGGAAACCTGTCCTCACTGAGCACCTTAGATCTCAGTTTCAATTCTTTGACTGGAAACA TCCCAGCAGAAATTGGCAGACTATCTCAATTGCAGTTACTTGCACTAAATACAAATTCATTGCATGGTGAGATTCCAAAAGAAATAGGAAATTGTTCAAG GCTTAGACAGCTGGAACTCTTTGACAACCAGCTCTCCGGAAAGATTCCTGCAGAAATAGGACAGTTGTTAGCTTTGGAGACCTTTCGTGCGGGCGGTAAC CCAGGAATTTATGGACAAATTCCAATGCAGATATCCAACTGCAAAGGACTACTCTTTTTGGGTCTTGCAGATACTGGGATTTCAGGAGAGATTCCAAGTA GTTTAGGGGAATTGAAGCATCTTGAGACTCTTTCGGTCTACACAGCTAATCTTACAGGCAGCATTCCAGCAGAAATTGGCAACTGCTCAGCGTTAGAGCA TCTTTATCTGTACGAAAACCAACTTTCAGGCAGAGTTCCTGATGAATTGGCTTCGTTGACAAATCTCAAGAAGTTGTTGTTATGGCAGAACAATCTAACT GGGAGCATTCCAGATGCTCTAGGCAATTGTTTGTCTTTAGAAGTAATTGATCTCTCGATGAATTTTCTAAGTGGTCAGATTCCTGGGTCTCTTGCCAATT TGGTTGCATTGGAGGAGCTTCTTTTATCAGAGAATTACCTTTCAGGAGAAATCCCGCCTTTTGTTGGCAACTATTTTGGCCTGAAGCAGCTTGAGCTGGA TAACAACAGATTCACCGGTGAGATTCCACCAGCCATCGGGCAACTGAAGGAGCTTTCGCTGTTTTTTGCATGGCAGAACCAGCTCCATGGAAGCATACCT GCTGAACTAGCCAGATGTGAGAAACTTCAAGCATTGGATCTTTCGCACAATTTCCTTACTGGTTCAATTCCACCCTCTCTGTTCCATCTCAAGAACTTAA CTCAATTACTGCTGATATCAAATGGATTTTCAGGTGAAATTCCTCCAGATATTGGTAATTGCATTGGTTTGATCCGTTTACGGTTAGGATCAAACTACTT TTCTGGTCAAATTCCCTCGGAAATAGGTCTCTTACATAGCTTGAGCTTCCTTGAATTGTCAGATAATCAATTTACTGGAGAAATCCCTGCAGAGATTGGC AACTGCACTCAACTAGAAATGGTTGATTTGCACAACAATAGGCTCCATGGAACCATTCCCACATCTGTCGAGTTTCTTGTTAGTCTAAACGTTTTAGACC TTTCCAAGAACTCTATAGCAGGCTCAGTACCTGAGAACTTGGGTATGCTTACATCCTTGAACAAATTGGTAATTAACGAAAACTACATTACTGGTTCTAT TCCGAAGTCCCTTGGCCTGTGTAGGGATCTGCAGTTGTTAGATATGAGCAGCAACAGGCTCACTGGTTCAATCCCAGATGAGATAGGTCGATTGCAAGGA CTAGACATCCTCTTGAATTTGAGTAGGAATTCTCTAACGGGCCCTATTCCTGAAAGCTTCGCAAGTCTTTCGAAACTTTCCAACCTGGATCTTTCGTACA ACATGCTCACAGGAACACTGACAGTGCTAGGCAGTCTTGACAATCTTGTTTCTCTCAATGTCTCGTACAACAACTTTTCAGGGCTGCTTCCTGATACCAA GTTCTTCCATGATCTCCCTGCCTCTGTATATGCTGGCAATCAAGAGCTCTGCATTAACAGAAACAAGTGTCACATGGATGGAAGTCACCATGGCAAGAAC ACCAAAAACCTAGTCGCGTGCACTCTTCTCAGTGTAACTGTTACCTTGTTGATTGTGCTTCTTGGGGGACTTCTGTTTATCAGAACCCGTGGAGCTTCTT TTGGAAGGAAAGATGAAGACATCTTGGAGTGGGATTTCACCCCATTTCAAAAGCTTAACTTCTCGGTAAATGATATTTTGACAAAGCTCTCAGATTCAAA CATTGTTGGGAAAGGTGTTTCAGGCATTGTTTATCGTGTCGAGACTCCAATGAAACAGGTCATTGCAGTGAAAAGGTTGTGGCCGCTGAAGAATGGGGAA GTTCCAGAAAGAGACCTGTTTTCTGCCGAGGTTAGAGCTCTTGGATCAATAAGGCATAAAAATATAGTGAGGCTTCTTGGATGCTGTAACAATGGAAAAA CCAGGTTGCTCTTATTTGACTACATCAGCAATGGGAGTTTGGCTGAATTGCTCCATGAGAAGAATGTATTCTTGGATTGGGATACAAGATACAACATAAT ACTGGGGGCAGCTCATGGCTTGGCTTATCTTCATCATGATTGTATTCCTCCAATCGTACATCGTGACATCAAGGCTAATAACATCTTGATTGGACCTCAG TTTGAAGCTTTTCTTGCAGATTTCGGGCTGGCAAAGCTCGTTGATTCTGCAGAATGTTCAAGAGTTTCTAATACAGTTGCAGGTTCTTATGGGTACATTG CCCCAGAATATGGATACAGTTTCAGAATAACAGAGAAAAGTGATGTGTACAGCTATGGTGTAGTGCTCCTAGAGGTCTTAACAGGGAAAGAACCTACTGA TAACCGGATCCCTGAAGGTGTCCACATTGTCACATGGGTTAGCAAGGCACTTCGAGAAAGAAGAACAGAATTGACATCAATTATAGATCCACAACTACTT TTGCGATCAGGTACACAACTCCAAGAAATGCTTCAGGTGATTGGGGTGGCCCTCCTGTGTGTGAACCCTTCCCCAGAAGAACGGCCCACCATGAAAGATG TAATAGCAATGCTGAAGGAGATTAAACATGAAAATGAATATTCAGAGAAACCAAAATATCGTGGCAAGGAAGCAGCTACCAATCCAAAAGCAGCAGTTCA CTCTTCTAGTTTCTCTAGATCATCTGAACCTCTAATTAGATCACCTTCCTAA
AA sequence Show only first row Show all	>Potri.005G188700.1 pacid=42804808 polypeptide=Potri.005G188700.1.p locus=Potri.005G188700 ID=Potri.005G188700.1.v4.1 annot-version=v4.1 MMSSNAITIFLLFLNISIFPAISALNQEGHSLLSWLSTFNSSFSSTFFSTWDPSHQNPCKWDYVRCSSNGFVSEIIITSINLPTGFPTQLLSFNHLTTLV LSNGNLTGEIPRSIGNLSSLSTLDLSFNSLTGNIPAEIGRLSQLQLLALNTNSLHGEIPKEIGNCSRLRQLELFDNQLSGKIPAEIGQLLALETFRAGGN PGIYGQIPMQISNCKGLLFLGLADTGISGEIPSSLGELKHLETLSVYTANLTGSIPAEIGNCSALEHLYLYENQLSGRVPDELASLTNLKKLLLWQNNLT GSIPDALGNCLSLEVIDLSMNFLSGQIPGSLANLVALEELLLSENYLSGEIPPFVGNYFGLKQLELDNNRFTGEIPPAIGQLKELSLFFAWQNQLHGSIP AELARCEKLQALDLSHNFLTGSIPPSLFHLKNLTQLLLISNGFSGEIPPDIGNCIGLIRLRLGSNYFSGQIPSEIGLLHSLSFLELSDNQFTGEIPAEIG NCTQLEMVDLHNNRLHGTIPTSVEFLVSLNVLDLSKNSIAGSVPENLGMLTSLNKLVINENYITGSIPKSLGLCRDLQLLDMSSNRLTGSIPDEIGRLQG LDILLNLSRNSLTGPIPESFASLSKLSNLDLSYNMLTGTLTVLGSLDNLVSLNVSYNNFSGLLPDTKFFHDLPASVYAGNQELCINRNKCHMDGSHHGKN TKNLVACTLLSVTVTLLIVLLGGLLFIRTRGASFGRKDEDILEWDFTPFQKLNFSVNDILTKLSDSNIVGKGVSGIVYRVETPMKQVIAVKRLWPLKNGE VPERDLFSAEVRALGSIRHKNIVRLLGCCNNGKTRLLLFDYISNGSLAELLHEKNVFLDWDTRYNIILGAAHGLAYLHHDCIPPIVHRDIKANNILIGPQ FEAFLADFGLAKLVDSAECSRVSNTVAGSYGYIAPEYGYSFRITEKSDVYSYGVVLLEVLTGKEPTDNRIPEGVHIVTWVSKALRERRTELTSIIDPQLL LRSGTQLQEMLQVIGVALLCVNPSPEERPTMKDVIAMLKEIKHENEYSEKPKYRGKEAATNPKAAVHSSSFSRSSEPLIRSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	0	1
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	1.00	0.9648
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Potri.001G112200 [exp]	3.46	0.9200	KNAT7.1
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.005G145300 [exp]	4.12	0.8985
AT4G36945			PLC-like phosphodiesterases su...		Potri.007G045200 [exp]	5.09	0.9310
AT1G27850			unknown protein		Potri.010G056200 [exp]	5.19	0.9261
AT1G19835			Plant protein of unknown funct...		Potri.005G237100 [exp]	5.74	0.9058
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	8.36	0.9020
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	9.38	0.9141
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.005G086700 [exp]	10.24	0.9186
AT5G35960			Protein kinase family protein ...		Potri.014G136300 [exp]	10.39	0.9106

Compare expression of checked genes

Potri.005G188700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.