Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21340 140 / 6e-40 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 135 / 4e-38 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 120 / 4e-32 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 118 / 2e-31 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G24060 117 / 3e-30 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 114 / 2e-29 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G61850 113 / 2e-29 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT5G65590 113 / 3e-29 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT5G60850 113 / 3e-29 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G55370 113 / 9e-29 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070700 [exp] 446 / 2e-159 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G202500 [exp] 150 / 2e-43 AT3G52440 176 / 3e-54 Dof-type zinc finger DNA-binding family protein (.1) Potri.016G069300 [exp] 148 / 1e-42 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 117 / 4e-31 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.008G055100 [exp] 117 / 3e-30 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.015G009300 [exp] 114 / 6e-30 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 114 / 1e-29 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.001G086400 [exp] 113 / 2e-29 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.011G055600 [exp] 113 / 7e-29 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029767 [exp] 142 / 1e-40 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10013586 [exp] 134 / 2e-37 AT3G52440 137 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10028611 [exp] 127 / 3e-35 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10025707 [exp] 114 / 3e-29 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10014001 [exp] 111 / 1e-28 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10034652 [exp] 111 / 1e-28 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10002381 [exp] 112 / 2e-28 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10012619 [exp] 112 / 2e-28 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10015425 [exp] 110 / 3e-28 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10014002 [exp] 108 / 3e-28 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.005G188900.1 pacid=42803008 polypeptide=Potri.005G188900.1.p locus=Potri.005G188900 ID=Potri.005G188900.1.v4.1 annot-version=v4.1 ATGTACTCTGCAACTGACCAAATGATGTTTCAATGCCCTCCTAGGCCATTGCCAAAGGAGAAGAAATGGAAATCCAAAGTCGAAGCTGCTCCAAATTGCC CTCGTTGTGCTTCTCCCAACACGAAATTCTGCTACTACAATAACTATAGCTTGTCACAGCCTAGGTATTTTTGCAAGGGTTGCAGAAGGTACTGGACTAA AGGAGGGTCAATAAGAAATGTTCCCGTAGGTGGTGGTTGTCGCAAGTATCGCAGAGCCAAGTCCTCTAAGGTCTCCCAGAATGAACGTGCTGCGGTTTCG GTGAATTATTCTAGGACTAACGAGACGACATTAGCTTGTTCCACGAATAAGGACTCAATGGCTCAACAAGGTGGAGCTAATGGGTCTGATATTGATCTAG CTGTTGTTTTCGCTAAGTTCTTGAATCAAGACTTGAGTTATGAGCCCGATTTTACTGGTGAAGAATTGCTTAATGAGGGCGGTGATCAGATGGTGGATGT ATCGAATTCTTCAAATCCATCTGACAGCTTCCAAAATGATTCAATGATGGAAAGCCTGAAGCGGTCTGATCTGATCCAAGAATCCAATTTACTTGAGGGG CAATCTCAGGTGCTTGTAGGAGAGAAGCAACGACTTGAAGAAGAGAGAATTCAAGAACTCATAGAAAGTCAAGACCTGAATGCATTTGGGTTGCAAGATT TATTGAGCGATGAAATTGTACAAGATGCTTTGTGGTCTGATGATGCAACCTTGCCTAATTTTCCTAATTGGCAGCCCATGCTACAATTGCAAGATTTTGA TTCATTTTCAGTGGATGATCGACTAAAGATTTCATCCAATTTTATCAGTGATAATAGTTGGAGTTCTTTGGATCTCTCGGGATTTGAGGTTTTTTCAAGA CCTTGA
AA sequence Show only first row Show all	>Potri.005G188900.1 pacid=42803008 polypeptide=Potri.005G188900.1.p locus=Potri.005G188900 ID=Potri.005G188900.1.v4.1 annot-version=v4.1 MYSATDQMMFQCPPRPLPKEKKWKSKVEAAPNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSIRNVPVGGGCRKYRRAKSSKVSQNERAAVS VNYSRTNETTLACSTNKDSMAQQGGANGSDIDLAVVFAKFLNQDLSYEPDFTGEELLNEGGDQMVDVSNSSNPSDSFQNDSMMESLKRSDLIQESNLLEG QSQVLVGEKQRLEEERIQELIESQDLNAFGLQDLLSDEIVQDALWSDDATLPNFPNWQPMLQLQDFDSFSVDDRLKISSNFISDNSWSSLDLSGFEVFSR P

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.005G188900 [exp]	0	1
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Potri.001G048300 [exp]	2.00	0.8176	Pt-HA1.2
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	2.44	0.7935
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	2.64	0.8176
					Potri.011G041124 [exp]	7.07	0.7958
AT1G75717			unknown protein		Potri.005G238400 [exp]	7.07	0.7712
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	7.34	0.7723	Pt-EXP2.8,PtrEXPA2
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G048000 [exp]	9.79	0.7607
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	10.95	0.7920
					Potri.018G001700 [exp]	11.00	0.7711
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086300 [exp]	11.48	0.7117

Compare expression of checked genes

Potri.005G188900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.