Plant FIBer expression Database

Potri.005G189000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76010 37 / 0.0005 Alba DNA/RNA-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G189000.1 pacid=42803984 polypeptide=Potri.005G189000.1.p locus=Potri.005G189000 ID=Potri.005G189000.1.v4.1 annot-version=v4.1
ATGGCAAAATCAGCCTTCTCTAGGCCCATGCCTGTCACGGTGATGACACTTCTTGTTGCAACTTTGTTGCTCATGTCTTCTGAGGTGGCAAATGCTACGC
TAAATTACGATGGAGCTGCAGCACTTACACTTGGACGAAGGGCTCTCCTAGCTGAAACCACCGGTCGAGGAGGCTACAACGAGAATCCTAATGGTCGAGG
AGGCTACAACGAGAATCCTAATGGCCGTGGAGGCTATAATGAGGATCCAACTGGTCGTGGAGGATATAATTAA
AA sequence
>Potri.005G189000.1 pacid=42803984 polypeptide=Potri.005G189000.1.p locus=Potri.005G189000 ID=Potri.005G189000.1.v4.1 annot-version=v4.1
MAKSAFSRPMPVTVMTLLVATLLLMSSEVANATLNYDGAAALTLGRRALLAETTGRGGYNENPNGRGGYNENPNGRGGYNEDPTGRGGYN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G189000
[exp]
0 1
AT1G08440 Aluminium activated malate tra... Potri.001G217300
[exp]
1.41 0.9533
AT5G39130 RmlC-like cupins superfamily p... Potri.013G064100
[exp]
3.74 0.9548
AT5G41761 unknown protein Potri.014G095000
[exp]
4.69 0.9211
AT1G56430 ATNAS4 ARABIDOPSIS THALIANA NICOTIANA... Potri.010G143133
[exp]
5.47 0.9390
AT3G61460 BRH1 brassinosteroid-responsive RIN... Potri.001G450700
[exp]
6.16 0.9298
AT5G59100 Subtilisin-like serine endopep... Potri.010G196900
[exp]
6.24 0.9381
AT5G39130 RmlC-like cupins superfamily p... Potri.013G063200
[exp]
6.48 0.9453
AT1G08440 Aluminium activated malate tra... Potri.001G217400
[exp]
7.34 0.9041
AT4G33790 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIF... Potri.009G145000
[exp]
8.00 0.8341
Potri.002G177700
[exp]
10.00 0.9274

Potri.005G189000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.