Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G16680 100 / 4e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G02890 96 / 6e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G61120 45 / 6e-05 unknown protein AT4G17850 43 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110400 [exp] 156 / 3e-43 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 129 / 7e-33 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.013G077900 [exp] 79 / 2e-15 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G041900 [exp] 75 / 4e-14 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 74 / 1e-13 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G040100 [exp] 50 / 2e-06 AT5G61120 127 / 1e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028603 [exp] 112 / 2e-26 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10009530 [exp] 93 / 1e-19 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020350 [exp] 92 / 2e-19 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G189400.1 pacid=42805429 polypeptide=Potri.005G189400.1.p locus=Potri.005G189400 ID=Potri.005G189400.1.v4.1 annot-version=v4.1 ATGGTAACAATTTGTCAGAAGTGCGGTGATAGAGGATTTGATGCGGCTTTGATTTTTTGTGATGAGTGTCAGGCTTACGCTGTGCATTGTTATTGCTTAG ATGTATTGCCAGCAACTTTTGATGAATATGTCGTCTGGTTATGTTATCACTGTGAATCAAAGGCTGTAAAATTATCCTCTCTTGACAGACCTAACTCTCC TATAAGCACAGAAAGTGACTCTGACAGTTTAAAAATTATCCAACTGAAGAAGAAAAATCCCTTAAAAAGACTGGAAGGGAAGCCTAAGGAAATGGTTTTT GATTGCTCATTGACTAACTCTGACTTGCTGAGACCTCAAATCAGCTCTGACTTCCAACTTGTTGAGGTGGACTGCTGTGAGGATGATGGAAAAGATCAGA AACTTGGAAGTCAAAATGGATTGCATGAGGACAGTGTTCCTGAAGTTGCTGAATATCTTGAAAGTAAAAATCCTGTATCTCCTCTACCTGACCTTCAACT TGTTGATGTTGATTGCTCTCAGAATGATGAGAAAGATCAGAAGCTTGGAGGAAAAAACAGTTTGGAGGAGTCTGGATTCCAAGAGACAGAACCTCTTAGA AACAAAAACTCTCAATTGGTTGTATGTGATGTTCAGCCCCTTCAGATACATTGCCGTGAGGATGGGGGGGGAAGTCAGAAGGTTGGGAGACAGAATGACT TGAATGAAGGCAACTTTGTTGAAGAAGATGAATTGGATAAAACTAAAATCTGCCACGTTGATGCTCCTTATTTTGCTGAGCAGAGTTCTATTCGTGTGCT ACCGATAAGAGATCCTATTTGGAGGGGAAGCATGAGCATTTTCCAAAATAATTATGGTGCTCCTGGTGGAATTGTTGCTCATTTGTCTAGCATTGCATGC TCCAGAGCGAGTGAGGAGGCAAAAGGATTATCTGGATTGCTTTCACCAGAATTGCTTCCTAGATCTGGGGTATGGCCAAAAAGTTTCCGGAAGTTGGGGC CAGCAGCTGATCATATAGGTCTCTATTTTTTCCCAGACAATGAAAGGAATGAAATTGTTTTTGATAGCCTAGTAAACGACATGATCAGCCAGGACCTTGC CATGAGAGTTGTTATTGAAAATGCAGAGCTCTTAATTTACACTTCTAGGATACTGCCCATGGATTGTTGGAGATTCCAGTCAAAGTTTTATCTGTGGGGA GTGTTCAGGCCAAAGAAGCCTTCGGCACCTGATGTTGTGCCTGGAGAGCAACAAGGCCTCACAAAGGCCATAACCTGGGAAAGACGGAGTCCTGTTAGTC CTTTAAGCAATGGCAGTTATGGTTCTGGCTTGATGTGTCCATCGCAAGATTCTTAA
AA sequence Show only first row Show all	>Potri.005G189400.1 pacid=42805429 polypeptide=Potri.005G189400.1.p locus=Potri.005G189400 ID=Potri.005G189400.1.v4.1 annot-version=v4.1 MVTICQKCGDRGFDAALIFCDECQAYAVHCYCLDVLPATFDEYVVWLCYHCESKAVKLSSLDRPNSPISTESDSDSLKIIQLKKKNPLKRLEGKPKEMVF DCSLTNSDLLRPQISSDFQLVEVDCCEDDGKDQKLGSQNGLHEDSVPEVAEYLESKNPVSPLPDLQLVDVDCSQNDEKDQKLGGKNSLEESGFQETEPLR NKNSQLVVCDVQPLQIHCREDGGGSQKVGRQNDLNEGNFVEEDELDKTKICHVDAPYFAEQSSIRVLPIRDPIWRGSMSIFQNNYGAPGGIVAHLSSIAC SRASEEAKGLSGLLSPELLPRSGVWPKSFRKLGPAADHIGLYFFPDNERNEIVFDSLVNDMISQDLAMRVVIENAELLIYTSRILPMDCWRFQSKFYLWG VFRPKKPSAPDVVPGEQQGLTKAITWERRSPVSPLSNGSYGSGLMCPSQDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G189400 [exp]	0	1
AT5G45660			unknown protein		Potri.011G076600 [exp]	10.86	0.7667
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.002G140900 [exp]	11.35	0.7353
AT5G14530			Transducin/WD40 repeat-like su...		Potri.001G345900 [exp]	27.38	0.6867
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	29.47	0.6935
AT1G68185			Ubiquitin-like superfamily pro...		Potri.010G118900 [exp]	40.69	0.5340
					Potri.019G001550 [exp]	45.25	0.6981
AT1G76065			LYR family of Fe/S cluster bio...		Potri.014G181400 [exp]	49.29	0.6954
AT2G23093			Major facilitator superfamily ...		Potri.007G052700 [exp]	51.43	0.6780
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.001G280100 [exp]	52.42	0.6900
AT1G06060			LisH and RanBPM domains contai...		Potri.002G029700 [exp]	54.44	0.5510

Compare expression of checked genes

Potri.005G189400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.