Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42120 671 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 422 / 1e-138 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 305 / 9e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 286 / 1e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 279 / 4e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 275 / 1e-82 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 270 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 270 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 267 / 2e-79 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 254 / 4e-75 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368300 [exp] 412 / 3e-135 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 409 / 4e-133 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 298 / 2e-91 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 297 / 6e-91 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 286 / 1e-86 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 286 / 1e-86 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 284 / 6e-86 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G130000 [exp] 284 / 1e-85 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 283 / 2e-85 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029769 [exp] 734 / 0 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 731 / 0 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 411 / 2e-125 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 313 / 4e-97 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 300 / 6e-92 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 295 / 5e-90 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 288 / 3e-87 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 285 / 2e-86 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 282 / 3e-85 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 282 / 2e-84 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G189500.1 pacid=42804070 polypeptide=Potri.005G189500.1.p locus=Potri.005G189500 ID=Potri.005G189500.1.v4.1 annot-version=v4.1 ATGCGTTCGTTTTCTTTTCTTGTTTTCTTGCTCTCGTTCTTTCTCTTATTTGACTTCAGCTTTCCCTCTCTTTCCGTCTCTTTCTTGCCAGATAGAAATG TTACTCTCTATGGTGATGCACATCTCACAAACAATGCCATTAGTCTCACTCAACAACACACCTGCCCTGCTTCATCATCATCATCATCATCATCTTCTAA TGGGGTTGGGAAAGCTCTCTACCTGTACCCAATTAGGTTTCTTGATCCTATAACTAACACAACCGCGTCTTTCTTTTGTCGATTCTCATTTTCCATTATT CGATCCCCACTTTGTTCTTCTGGTGATGGTATGGCATTCTTGATTACCTCTAATGCTGATTCTTTTAGTCTCTCAAAAGGGTACATGGGTCTTCCAGAAC CAGCCTTAAACCCTCAAGATTCATTCATTGCAGTGGAATTTGATACAAGTTGTGATCCTTCGCTTGGTGATATAAGTAGCAATCACATTGGAATTGATGC TAACACAATTGTCTCTTTTGCTGCAATTGATGCTGTGTCAGTAGGGATTGATCTACAAAGTGGGAGGCAGATCACGGCTTGGATTGAGTACTCAGATTCA TCCAAGTTGATTCAGGTGTGGGTCAGTTACTTTCAAGTCAGGCCACCAAGTCCTATTCTTGTGGCTCAGGTTGATCTCTCTGAGCATTTCAAAGAGTACA TGCATGTCGGTTTCTCTGCTTCGAATGGTCAGGGTTCAGCTGTTCACATTGTTGATCATTGGCGGTTCAAAACTTATGCGACTCTCTCGTCCGTGACACC TAGAGATACAAGTGATAAGGGGGATTGTTTAATGTGTTATCCAGAGAATCCAATGTACAATTACGGGCCCGGTACTCAAAATGGATGGAAAAAAAAGCTA CTAGAAATGGCTTTGGGATTGGGAGGTTTGGCTGCATTTACTGTCTCCTTAATTGTAGTTCTTTTTGTTATCATTTTCTTTGCGATAAAGAAAGGAAAGG GTGTTGGCGGAAGAACTAAAGAAGGCCGAATTAATAGAGTACCAAGAAGGCTGTCAATTACTGAGATTAGGACAGCAACAATGGGATTTCACCGAAGCAG AATTATTGGTCAAGGCGCTTCTGCTACAGTTTTTAAAGGGTATCTGTCCTCTTGTGGATCAGTGGCAGTTAAGAGGTTTGATCAGGCAGGGATTGAATGT GCTCGCAATCCTTTCATCACTGAGTTTGCAACAATGGTAGGTTGCTTAAGACATGAGAACTTGGTTCAGCTTCAAGGATGGTGTTGTGAGGGAACGGTAT TAGCTCTAGTCTATGAATACTTGCCCAATGGTAGCCTTAACGAAGTGCTTCACAAGAACTCCAGCTCTGCAATTTTTCTCTTGTGGAAGCAAAGAGTAAA TATAGTCCTTGGAGTTGCTTCTGCTCTTTCATATCTACATGAAGAATGTGAGAGACAGATAATTCATAGAGATGTGAAAGCTTGCAATATATTGCTTGAT GCAGAATTCAATGCCAAGCTTGGAGATTTCGGTTTAGCGGAAGTCTATGAACATAGTTCTGTGATGAGAGCAGCTACTATACCAGCTGGGACAACAGGAT ATCTCGCTCCTGAGTATGTTTACTATGGTGTTCCATCGGTGAAATCTGATGTTTACAGCTTTGGTGTGGTGATGCTAGAAGTAGCCACGGGAAAAAGACC TGTAGATGATGTTGGTGCAGTGCTGGTCGATCGGGTATGGAGCTTTTGGGAGAAAGGGAAACTGATAGAGGCTGCTGATTCAAAGTTGGTAGGGATGTTT AATACACTGGAAGTTGAGAGGATGCTCATGGTGGGACTTTCTTGTGTGCACCCAAATCATGAGATGAGGCCAACAGTTAAGGAGGCAGCTGTGATTCTTA GAGGCCAAGCGCCACTTCCTGTTTTGCCACAGAGGAAACCAGCAGTGGGATTTCAGTCTGTTTTGTCAGAGGATTCCGATGAAACACTGAATTTAGCAGG AGATAACAGTCCATGTACTGATGATGTAACATGGATGACACCTAGGACCAGTTTTGGCTAG
AA sequence Show only first row Show all	>Potri.005G189500.1 pacid=42804070 polypeptide=Potri.005G189500.1.p locus=Potri.005G189500 ID=Potri.005G189500.1.v4.1 annot-version=v4.1 MRSFSFLVFLLSFFLLFDFSFPSLSVSFLPDRNVTLYGDAHLTNNAISLTQQHTCPASSSSSSSSSNGVGKALYLYPIRFLDPITNTTASFFCRFSFSII RSPLCSSGDGMAFLITSNADSFSLSKGYMGLPEPALNPQDSFIAVEFDTSCDPSLGDISSNHIGIDANTIVSFAAIDAVSVGIDLQSGRQITAWIEYSDS SKLIQVWVSYFQVRPPSPILVAQVDLSEHFKEYMHVGFSASNGQGSAVHIVDHWRFKTYATLSSVTPRDTSDKGDCLMCYPENPMYNYGPGTQNGWKKKL LEMALGLGGLAAFTVSLIVVLFVIIFFAIKKGKGVGGRTKEGRINRVPRRLSITEIRTATMGFHRSRIIGQGASATVFKGYLSSCGSVAVKRFDQAGIEC ARNPFITEFATMVGCLRHENLVQLQGWCCEGTVLALVYEYLPNGSLNEVLHKNSSSAIFLLWKQRVNIVLGVASALSYLHEECERQIIHRDVKACNILLD AEFNAKLGDFGLAEVYEHSSVMRAATIPAGTTGYLAPEYVYYGVPSVKSDVYSFGVVMLEVATGKRPVDDVGAVLVDRVWSFWEKGKLIEAADSKLVGMF NTLEVERMLMVGLSCVHPNHEMRPTVKEAAVILRGQAPLPVLPQRKPAVGFQSVLSEDSDETLNLAGDNSPCTDDVTWMTPRTSFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42120			Concanavalin A-like lectin pro...		Potri.005G189500 [exp]	0	1
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117401 [exp]	1.73	0.9370
AT1G12300			Tetratricopeptide repeat (TPR)...		Potri.019G062266 [exp]	8.94	0.9127
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.003G178700 [exp]	10.95	0.9275
					Potri.004G163032 [exp]	11.66	0.8730
					Potri.001G255904 [exp]	12.96	0.9356
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	24.95	0.9266
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G182100 [exp]	26.32	0.8757
					Potri.006G174801 [exp]	36.23	0.9100
AT3G11310			unknown protein		Potri.010G022201 [exp]	40.39	0.9087
					Potri.007G117400 [exp]	40.47	0.8570

Compare expression of checked genes

Potri.005G189500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.