Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42130 541 / 0 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT1G34065 140 / 5e-38 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 138 / 2e-37 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT4G11440 139 / 7e-36 Mitochondrial substrate carrier family protein (.1) AT1G74240 116 / 4e-29 Mitochondrial substrate carrier family protein (.1) AT2G35800 108 / 3e-25 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G26360 99 / 7e-23 Mitochondrial substrate carrier family protein (.1) AT5G15640 97 / 1e-22 Mitochondrial substrate carrier family protein (.1) AT2G30160 94 / 3e-21 Mitochondrial substrate carrier family protein (.1) AT1G07030 94 / 4e-21 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127600 [exp] 140 / 2e-36 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 134 / 3e-36 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 129 / 3e-34 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.012G066000 [exp] 115 / 8e-29 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.008G043700 [exp] 110 / 6e-26 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 108 / 2e-25 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 97 / 2e-22 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 97 / 3e-22 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 97 / 3e-22 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029770 [exp] 521 / 0 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10042796 [exp] 304 / 1e-102 AT5G42130 260 / 1e-85 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10042797 [exp] 167 / 5e-51 AT5G42130 160 / 5e-49 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 132 / 3e-35 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 125 / 1e-32 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10017849 [exp] 114 / 4e-28 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 112 / 1e-26 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 111 / 3e-26 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 100 / 3e-23 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 99 / 6e-23 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.005G189600.1 pacid=42802643 polypeptide=Potri.005G189600.1.p locus=Potri.005G189600 ID=Potri.005G189600.1.v4.1 annot-version=v4.1 ATGGAGGCAAATCTGTGTGCATCTCTAGGCCTCCCATCTCCAAACTCTCAAAATCACCACAACCCAGCAATCCAAACTGACTTCACTAACCTCTTCGCTC AATTCTCCTCTCTTATATTGATTAAAAACCCAGAAAAACCGACCAAAACCCGCAATAAAACCACCCTCCCATTTGCCTCAAACTCCTTAAATTCCCAGAT TTTCGCACCAAAAAGCCCAAAATGGGTCCAATCCACCTCAAGAAACAGCCCCAAAGTCCAATCTTTAATGAAAAACCTCTCTGTTTTTGAGAGAGCACTT ATAGGAGCAGGTGGCGGCGGCATAGCCGGTGCATTTACTTATGTGTGTCTGCACCCGCTGGATACAATTAAAACGAAGTTGCAAACAAAGGGTGCATCTC AGATTTATAAAAATACACTTGATGCTGTGATTAAGACCTTTCAAGATAAAGGGATTTTGGGGTTTTATAGTGGTGTATCTGCTGTTATTGTGGGTTCTAC TGCATCTTCAGCCGTGTATTTTGGTACTTGTGAGTTTGGTAAATCAATTTTGTCAAAATTTGAGAAGTATCCATCCGTGCTTATCCCTCCAACTGCTGGT GCAATGGGCAATATTGTGTCATCAGCAATAATGGTGCCTAAAGAATTGATTACGCAGCAAATGCAAGCTGGTGCAAAGGGGAGATCTTGGGAAGTTTTGC TGAGAATTTTGGAAAAAGATGGTATCTTGGGTCTTTATGCAGGGTATTCTGCTACTTTGTTAAGGAATTTGCCTGCTGGTGTTCTGAGTTATTCTTCATT CGAGTATTTAAAAGCTGCTGTTTTGACTAAGACTAAAAAGAACAGTTTGCTGCCAATTGAAAGTGTGAGCTGTGGGGCACTGGCTGGGGCTATTTCAGCG TCTTTAACCACACCACTTGATGTGGTTAAGACCAGGTTGATGACCCAAATGAATAAGGACGTTGTGGATAAGGCTGCAGCTGTAATGTATAGTGGTGTTT CGGCGACAGTGAAGCAGATTTTGACGGAGGAAGGGTGGGTAGGTTTTACTAGGGGAATGGGTCCTAGAGTGGTTCATAGTGCTTGCTTTTCGGCTTTGGG ATACTTTGCATTTGAGACGGCAAGGCTTACTATCTTGCATCGGTACTTGAGGCACAAGGAGTTGCGCGAGTTGGATGCTGCTCCTACTTGA
AA sequence Show only first row Show all	>Potri.005G189600.1 pacid=42802643 polypeptide=Potri.005G189600.1.p locus=Potri.005G189600 ID=Potri.005G189600.1.v4.1 annot-version=v4.1 MEANLCASLGLPSPNSQNHHNPAIQTDFTNLFAQFSSLILIKNPEKPTKTRNKTTLPFASNSLNSQIFAPKSPKWVQSTSRNSPKVQSLMKNLSVFERAL IGAGGGGIAGAFTYVCLHPLDTIKTKLQTKGASQIYKNTLDAVIKTFQDKGILGFYSGVSAVIVGSTASSAVYFGTCEFGKSILSKFEKYPSVLIPPTAG AMGNIVSSAIMVPKELITQQMQAGAKGRSWEVLLRILEKDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLTKTKKNSLLPIESVSCGALAGAISA SLTTPLDVVKTRLMTQMNKDVVDKAAAVMYSGVSATVKQILTEEGWVGFTRGMGPRVVHSACFSALGYFAFETARLTILHRYLRHKELRELDAAPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Potri.005G189600 [exp]	0	1
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.004G164000 [exp]	4.24	0.9456
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	6.78	0.9637
AT5G28750			Bacterial sec-independent tran...		Potri.005G053400 [exp]	9.38	0.9276
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Potri.010G232600 [exp]	12.36	0.9256
AT2G35830			unknown protein		Potri.010G217500 [exp]	13.41	0.9486
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.008G186601 [exp]	15.36	0.9499
AT4G17560			Ribosomal protein L19 family p...		Potri.001G152200 [exp]	16.24	0.9504
AT2G46735			unknown protein		Potri.002G178100 [exp]	18.00	0.9474
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	19.36	0.9501
AT1G22630			unknown protein		Potri.013G108100 [exp]	23.45	0.9449

Compare expression of checked genes

Potri.005G189600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.