Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18710 260 / 4e-83 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G64660 255 / 4e-81 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT5G09800 243 / 2e-76 ARM repeat superfamily protein (.1) AT5G65920 116 / 2e-28 ARM repeat superfamily protein (.1) AT3G49810 111 / 9e-27 ARM repeat superfamily protein (.1) AT3G46510 102 / 3e-23 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 96 / 4e-21 PUB11 ARM repeat superfamily protein (.1) AT3G52450 91 / 1e-19 PUB22 plant U-box 22 (.1) AT1G66160 90 / 2e-19 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT5G37490 87 / 2e-18 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070500 [exp] 575 / 0 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.007G110600 [exp] 293 / 8e-96 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.005G057500 [exp] 286 / 7e-93 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 106 / 3e-25 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.008G035700 [exp] 100 / 1e-22 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 97 / 1e-21 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.007G105300 [exp] 96 / 1e-21 AT1G49780 157 / 8e-44 plant U-box 26 (.1) Potri.005G063700 [exp] 96 / 1e-21 AT1G49780 139 / 3e-37 plant U-box 26 (.1) Potri.001G238500 [exp] 94 / 2e-20 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029771 [exp] 375 / 4e-128 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10042798 [exp] 370 / 4e-126 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10005810 [exp] 300 / 2e-98 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10006791 [exp] 183 / 1e-54 AT5G09800 270 / 1e-88 ARM repeat superfamily protein (.1) Lus10010598 [exp] 116 / 2e-28 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10016166 [exp] 108 / 1e-25 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 105 / 1e-24 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10037970 [exp] 102 / 2e-23 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10021267 [exp] 96 / 1e-21 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016565 [exp] 97 / 2e-21 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G189800.1 pacid=42804296 polypeptide=Potri.005G189800.1.p locus=Potri.005G189800 ID=Potri.005G189800.1.v4.1 annot-version=v4.1 ATGGGGAGAGACGAACTCTGCATAACCGTACCCAGTCTTTTTCACTGTCCGATTTCTCTCGACGTAATGAACTCTCCCGTGAGTCTCTGCACCGGCGTCT CATACGATCGCTCCAGTATCCAACACTGGCTCGACTCCGGTCACGACACCTGTCCTGCCACCATGCAAGTCCTCTCCTCCAAGGACTTTGTTCCTAACCT CACTCTCCGCCGCCTTATCAACCTCTGGACCTCCTCGAACTCCTCGAACTCCTCTCCCTCTACTGCAGATTTGGAAGAGAAGGTTATGGCTTGGATTGAA GAAATTAACAACGCAAAACCCGAGAGGTGTTTGGGTTCGATTGTGGAATTTGCTAGTCGTGGAGAGGTGAACCGAAGTCTTTTGGCAAGTTTTGATGGTT TTTTGGAGACTATCGTTGGTGTTTTGAGCATAAATGGCATGCAAATTCGTGTTTTGGAGTCGGTTGTCAGGATCTTAAGTTTAATTTTGCTTGAAAACGG AGTCAACGAAAAATTGCACAAACTAATCCTCAAATCATCTTCGAACTCGAGTTGTTTACCTTCATTTATTTCTATTCTGCGAAATGGGAGTTTAGAGTCC AAGATGGCATGCTTCACTGTTTTAGAATCAGTTACTACAAACAACGAATCAAAGCGATTCATTGCAGGAGTGGAGAACAACTTCTTGCCTGTTATAATTC ATCTCATCAAAATAGATAACGACAACCAAGAGTTACACGACGTGGTTTTATCGTTCTTGATTGCGGTTTCTGTGGCTCGCTCCATCAAGTCACAGCTGGT TCAACTCGGAATCGTCGAAGTTTTATCTAACATGATGTCGAGCAAAAACGCTGCCATTTCTGTCGTGGAGAAGTCACTGAAGATATTGTCAATGGTTTGC ACGTGTGCGGATGGACAGTCAGCGCTAAGCGGTGACCAGAAATGTGCGGGGGCAATAGTGGAGAGACTAATGAAGGTCTCAAAAACGGCAACGGAGGATG CCGTGGTGGTGCTGTGGAGCATGTGTTGTTTGTTCAGGGATGAGAAGGTGGTGGAGAAAGTGGCGAGGAGCAACGGAGTGACAAAAGTATTGCTGGTTAT GCAAAGTGAAGTAGGGGAAGGGAATTATGTAAGGAGGATGTGTGGTGACTTGATCAAGGTTTTGAGGTTTGGGTGTAAGAATGTCGGTGGATTTAGTGGG GCGGTGAGCTATGAGACCAAAACTACACATATCATGCCTTGTTAA
AA sequence Show only first row Show all	>Potri.005G189800.1 pacid=42804296 polypeptide=Potri.005G189800.1.p locus=Potri.005G189800 ID=Potri.005G189800.1.v4.1 annot-version=v4.1 MGRDELCITVPSLFHCPISLDVMNSPVSLCTGVSYDRSSIQHWLDSGHDTCPATMQVLSSKDFVPNLTLRRLINLWTSSNSSNSSPSTADLEEKVMAWIE EINNAKPERCLGSIVEFASRGEVNRSLLASFDGFLETIVGVLSINGMQIRVLESVVRILSLILLENGVNEKLHKLILKSSSNSSCLPSFISILRNGSLES KMACFTVLESVTTNNESKRFIAGVENNFLPVIIHLIKIDNDNQELHDVVLSFLIAVSVARSIKSQLVQLGIVEVLSNMMSSKNAAISVVEKSLKILSMVC TCADGQSALSGDQKCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVVEKVARSNGVTKVLLVMQSEVGEGNYVRRMCGDLIKVLRFGCKNVGGFSG AVSYETKTTHIMPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.005G189800 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.014G102000 [exp]	1.41	0.8569
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.012G131300 [exp]	2.00	0.8605	Pt-AAT1.1
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	3.87	0.8549
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047900 [exp]	5.19	0.8361
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027300 [exp]	7.41	0.8454
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	8.94	0.8376
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	11.48	0.8548
AT1G16670			Protein kinase superfamily pro...		Potri.006G128500 [exp]	12.64	0.8135
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014350 [exp]	19.23	0.8321
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	20.04	0.8402

Compare expression of checked genes

Potri.005G189800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.