Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42140 1406 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 1405 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 967 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 934 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 934 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 931 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 696 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 517 / 3e-166 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 513 / 2e-165 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 182 / 1e-49 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070300 [exp] 1887 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 1074 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 979 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 925 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 838 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 746 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 676 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 599 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 527 / 4e-169 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018904 [exp] 1668 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 1650 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 1565 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 1516 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 975 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10027273 [exp] 950 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10009701 [exp] 919 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10030999 [exp] 824 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 783 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10024157 [exp] 774 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF08381 [poplar] [flax] BRX Transcription factor regulating root and shoot growth via Pin3 CL0390 [poplar] [flax] PF13713 [poplar] [flax] BRX_N Transcription factor BRX N-terminal domain CL0266 [poplar] [flax] PH PF16457 [poplar] [flax] PH_12 Pleckstrin homology domain
Representative CDS sequence Show only first row Show all	>Potri.005G190000.1 pacid=42804781 polypeptide=Potri.005G190000.1.p locus=Potri.005G190000 ID=Potri.005G190000.1.v4.1 annot-version=v4.1 ATGGCAGATCTTGTTAGCTACGGTAATGCCGAACGTGACATCGAGCAGGCATTAATTGCTTTGAAGAAGGGCTCTCAACTTTTGAAATATGGTCGCAAGG GAAAGCCAAAGTTTTGTCCGTTTAGACTTTCTAATGATGAAACAACTTTGATCTGGATTTCAAGTGGTGGTGAAAGAAGTTTGAAGTTAGCCTCAATCTC TAAAATTATTCCAGGACAAAGAACTGCTGTTTTCCAAAGATATCTTCGCCCTGAAAAGGACTATTTATCATTTTCTCTTATATACAACAACGGGAAGCGG TCCCTCGATCTGATTTGCAAGGACAAAGTTGAGGCGGAGGTGTGGATTGCAGGCTTAAAGGCATTAATATCCTCTAGTCAAGGTGGGCGCTCCAAAATTG ATGGATGGAGTGATGGAGGCCTCTACCTTGATGATGGCAGAGATTTAACATCAAATAGTGCTAGTGACAGTTCTGTTAGTATTTCGCGTGATATTAGCTC TCCAGAGATTTCTGTCAGTTTGAACCCAAATACATCTCCGAAGAATTTTTGGCCTGAGAGTTCTCTGCATTCTGATCGGTCACATGTAGCATCAGAAAAC ACAAATATGCAAGTCAAAGGATCTGGTTCAGATGCTTTTAGAGTTAGTGTTTCCAGTGCTCCCAGCACTTCCAGTCATGGTTCTGCACCTGATGATTGTG ATGCTTTAGGTGATGTATACATATGGGGTGAGGTCTTATGTTCTGTTAAGGTTGGGGCTGATAAGAACACCAGTTATTTAAGCACTAGAGCTGATGTGCT TCTTCCCAGGCCTTTAGAATCTAATGTAGTTTTAGATGTACATCATATAGCCTGTGGAGTCAGACATGCTGCCATGGTCACAAGGCAGGGTGAAGTTTTT ACATGGGGTGAAGAATCTGGTGGAAGGCTTGGCCATGGTGCTGGGAAAGATGTTATTCAACCTTGCTTGGTTGAATCTTTGGCAGCGACTACTGTTGACT TTGTAGCATGTGGAGAATTCCATTCTTGTGCTGTTACAATGGCTGGGGAACTCTATACATGGGGAGATGGGACGCACAATGCTGGGCTTCTTGGTCATGG CACTGATGTCAGTCACTGGATACCCAAGAGAATCTCTGGTCCTCTTGAGGGTCTTCAAGTTGCTTCTGTAACATGTGGTCCATGGCATACAGCTTTGGTG ACATCAATGGGGCAGCTTTTTACATTTGGTGATGGAACATTCGGTGTCTTAGGCCATGGCAACAGAGAAAATGTTGCATATCCTAGAGAAGTAGAATCAC TCGCTGGGTTGAGGACAATTGCTGTTGCTTGTGGAGTGTGGCATACTGCTGCTGTAGTGGAGGTTATTGTCGCTCAATCAAGTTCCAGTGCTTCGTCTGG AAAATTGTTTACCTGGGGTGACGGAGACAAAAATCGTCTTGGACATGGTGACAAAGAACCTCGACTTGAACCCACATGCGTGCCAGCATTGATTGATTAC AATTTTCACAAAATTGCTTGTGGACATAGTTTAACTGTTGGCTTGACCACGGCAGGACATGTTTTCACAATGGGCAGTACTGTTTATGGTCAGCTTGGGA ATCCTTGTGCTGATGGGAAGGTGCCTTGCTTGGTAGAAGATAAACTTTATGGAGAATCTGTTGAAGAAATTGCCTGTGGTGCATATCATGTAGCAGCTTT GACATCCAGGAACGAGGTTTATACCTGGGGAAAGGGTGCCAATGGCAGGTTGGGCCATGGAGACGGTGAAGATCGAAAAACACCTACTATAGTTGAAGCT TTGAAGGATAGACATGTGAAATATATTGCATGCGGTGCGAACTATTCTGCAGCTATATGCTTCCATAAATGGGTATCCGGTTCTGAGCAGTCCCAGTGTT CGTCCTGCAGACAGGCTTTTGGATTTACTCGGAAAAGGCACAACTGCTACAATTGTGGACTTGTTCACTGCCATTCATGCAGTTCCAGAAAAGCAACAAG AGCAGCCTTAGCTCCTAACCCCAGCAAACCATATCGTGTCTGTGATTCCTGTTTTGTCAAACTAAATAAGATGTCAGAACCTAGTAACACTAACAGGAGA AATGCTGGACCTCGCCTTTCCGGTGAAAACAAAGACAGGTTGGACAAGGCTGATTTAAGGTTGTCGAAGTCTACACCGCCTTCAAACCTGGATTTGATTA AGCAACTAGATAGCAAAGCAGCCAAACAAGGAAAGAAGGCGGATACATTTTCTCTTGTCCGGTCATCTCAAGCACCTTCTTTGTTACAGCTGAAAGATGT TGTTTTGTCCAGTGCTATTGATCTGCGACCAAAGGTTTCCAAACCTGTTCTTACGCCATCCGGAGTAAGTTCCAGGTCTGTGTCACCTTTTTCAAGGAGA CCTAGCCCTCCACGTTCAGCAACACCTGTTCCAACGATGTCAGGACTTTCCTTCACCAAAAGTATAGCTGATAGTCTGAAGAAAACAAATGAACTTTTGA ATCAAGAAGCGCTTAAGTTGCGTACACAGGTTGAGAGCCTGAGACAGAGATGTGAATTCCAAGAATTAGAACTTCAGAAATCTGCGAAGAAGATACAAGA AGCTATGGCAGTAGCTGCTGAAGAGTCAGCTAAGTCTAAAGCTGCAAAAGATGTTATAAAATCACTTACTGCACAGCTCAAGGATATGGCTGAGAGGCTG CCGCCTGGGGTCTATGATACTGAGAGCATGAAACTGTCTTACCTACCAAATGGTTTGGAGACAAATGGCATTCATTATCCTGATACAAATGGAGGGCGGC ATTCAAGATCCGATTCTATAAGAGGAACTTCTTTGGCTTCCCCGACAAGAAGCGACTCCACTTCAATAAATGGAACTCTAAGTATCGCTCAATCATTCCG GGATTCACCTGGAACCAATGGGAGGGATGACCATCTGGCTGCTAGACTGTCCAATGGTGGTGGAGGGGTTCAGCCAAGTGGTAATAGTATGTCAGAGGCG ATTGATGGGAAGGAACCTTGGTCCCCTCAAGATGGTGATAATGGTATGAAATCTAGGGATTCATCATTGGTTGCTAACGGGAATCAAGTTGAGGCTGAGT GGATTGAACAGTATGAGCCGGGAGTGTATATTACTCTTGTTGCCCTGCGTGATGGAACTAGAGATCTCAAACGAGTGCGCTTCAGTCGGAGAAGATTTGG GGAGCACCAAGCAGAAACTTGGTGGTCGGAGAATCGTGAAAAAGTGTATGAGAAGTACAATGTTAAAGGTTCAGACAAATCATCAGTTACTGGCCAGGCA GCACGTAGATCAGAGGGAGGCATGTCCTCTTCTTCTATACCTTAG
AA sequence Show only first row Show all	>Potri.005G190000.1 pacid=42804781 polypeptide=Potri.005G190000.1.p locus=Potri.005G190000 ID=Potri.005G190000.1.v4.1 annot-version=v4.1 MADLVSYGNAERDIEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDETTLIWISSGGERSLKLASISKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKR SLDLICKDKVEAEVWIAGLKALISSSQGGRSKIDGWSDGGLYLDDGRDLTSNSASDSSVSISRDISSPEISVSLNPNTSPKNFWPESSLHSDRSHVASEN TNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVLCSVKVGADKNTSYLSTRADVLLPRPLESNVVLDVHHIACGVRHAAMVTRQGEVF TWGEESGGRLGHGAGKDVIQPCLVESLAATTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALV TSMGQLFTFGDGTFGVLGHGNRENVAYPREVESLAGLRTIAVACGVWHTAAVVEVIVAQSSSSASSGKLFTWGDGDKNRLGHGDKEPRLEPTCVPALIDY NFHKIACGHSLTVGLTTAGHVFTMGSTVYGQLGNPCADGKVPCLVEDKLYGESVEEIACGAYHVAALTSRNEVYTWGKGANGRLGHGDGEDRKTPTIVEA LKDRHVKYIACGANYSAAICFHKWVSGSEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSRKATRAALAPNPSKPYRVCDSCFVKLNKMSEPSNTNRR NAGPRLSGENKDRLDKADLRLSKSTPPSNLDLIKQLDSKAAKQGKKADTFSLVRSSQAPSLLQLKDVVLSSAIDLRPKVSKPVLTPSGVSSRSVSPFSRR PSPPRSATPVPTMSGLSFTKSIADSLKKTNELLNQEALKLRTQVESLRQRCEFQELELQKSAKKIQEAMAVAAEESAKSKAAKDVIKSLTAQLKDMAERL PPGVYDTESMKLSYLPNGLETNGIHYPDTNGGRHSRSDSIRGTSLASPTRSDSTSINGTLSIAQSFRDSPGTNGRDDHLAARLSNGGGGVQPSGNSMSEA IDGKEPWSPQDGDNGMKSRDSSLVANGNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVKGSDKSSVTGQA ARRSEGGMSSSSIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42140			Regulator of chromosome conden...		Potri.005G190000 [exp]	0	1
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	5.83	0.6884
AT1G20760			Calcium-binding EF hand family...		Potri.005G253000 [exp]	6.48	0.6856
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.002G047700 [exp]	12.84	0.6574
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.001G049400 [exp]	19.18	0.5820
AT5G24350			unknown protein		Potri.015G008500 [exp]	21.40	0.6863
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	25.09	0.5955
AT1G53200			unknown protein		Potri.012G106300 [exp]	27.96	0.6112
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	29.69	0.6365
AT5G24350			unknown protein		Potri.012G020000 [exp]	30.72	0.6815
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	40.59	0.6334

Compare expression of checked genes

Potri.005G190000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.