Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76920 531 / 0 F-box family protein (.1) AT5G15710 82 / 9e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 50 / 1e-06 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT5G42360 44 / 0.0002 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42350 44 / 0.0002 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55070 42 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT3G61590 42 / 0.0006 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069900 [exp] 649 / 0 AT1G76920 496 / 1e-176 F-box family protein (.1) Potri.004G112400 [exp] 85 / 5e-18 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 78 / 2e-15 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 63 / 1e-10 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G160900 [exp] 62 / 2e-10 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G057100 [exp] 50 / 2e-06 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 50 / 2e-06 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G118700 [exp] 48 / 5e-06 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G000900 [exp] 47 / 2e-05 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018896 [exp] 421 / 2e-147 AT1G76920 431 / 2e-151 F-box family protein (.1) Lus10028591 [exp] 280 / 3e-94 AT1G76920 281 / 5e-95 F-box family protein (.1) Lus10031955 [exp] 81 / 2e-16 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 80 / 6e-16 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 61 / 8e-10 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10015775 [exp] 50 / 1e-06 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 50 / 2e-06 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 49 / 3e-06 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10010610 [exp] 45 / 4e-05 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G190400.1 pacid=42805433 polypeptide=Potri.005G190400.1.p locus=Potri.005G190400 ID=Potri.005G190400.1.v4.1 annot-version=v4.1 ATGGACGCCTCACCGATCAACCGTCTACCACAAGACACACTCAACCAGATCTTCTCCTCTCTCCCACTTCGTCAAATCATGATTTGCAGATCTGTCTGCA AGTTCTTCAATCAAATGTTGACCTCACCATCCTTCATGGACCTAATCTCCACTCAAACCCCTCTCCGCTTCCTCGCTCTCCGCCCTCCACATCACCACCA CCACCATCAAAGACATAATAGTCACGTCTCCTCTCTACCTTACCTCCACGTGTTCGATCCAGACCAGAATCAATGGCTAAGATTTAGTCTCAGCTTTTTA CCTTTCAGGTCACCTCAACCTGTCGCCTCAGCGAGTGGACTCGTTTACCTCTGGGGTGAATCACCCAACTCGCTCGAGTCAAACAGATCACTCGTTGTCT GCAACCCCTTGACTCGCCAATTTCAGGTGCTCCCCCAGCTTGGCTCGGCCTGGTCACGACACGGATCTGTCCTGGTTGACTCAGTGAACCACCGAGTCAT GGTATTAACTGAACTCGCTGCTTTATATTTCTCAAACACAAATAAAACAAACTCGTGGTTAACTTTCTCTGCGAATTTACCATCAAAACCCAGAAGCCCT ATTTTAATATCGGACTCGGTTTTCGCTTTATGTGATGTTGGGTCTCGATGGAGATCTCAATGGAAGCTCTTTACATGTACACTGACGAATCTTAACAATA GTTATAACAATTGGGTTTGTTTGGGAAGGCTTGAATGGGGAGATATCTTTGATATTATCAAACGACCACGTTTGGTTCGTGGAAAGGGGAATAAATTGTT GATGATTGGAGTGTTAAAGTCAAATTTTTCTTTGAATCCATCGTGTTCGACGATATTGATATTGAGGTTGGATTTGGCGAGAATGGAGTGGGAGGAGGCA GGACGGATGCCATCGGAGATGTATAAGAGTTTTCAGGAATCGAGTAAGTTTAAGATTTTTGGTGGTGGGGATAGGGTCTGTTTATCTGCGAAGAGAGTGG GGAAGTTGGCTTTGTGGGATGACTGTGATGGTGTGGTTTGGAGGTGGATTGAAGGAGTGCCCGGAGGTGGTGATGGGCTTTGTCGAGGGTTTGTGTTCGA GGCTAGTCTCACTGCATTGTCTTGA
AA sequence Show only first row Show all	>Potri.005G190400.1 pacid=42805433 polypeptide=Potri.005G190400.1.p locus=Potri.005G190400 ID=Potri.005G190400.1.v4.1 annot-version=v4.1 MDASPINRLPQDTLNQIFSSLPLRQIMICRSVCKFFNQMLTSPSFMDLISTQTPLRFLALRPPHHHHHHQRHNSHVSSLPYLHVFDPDQNQWLRFSLSFL PFRSPQPVASASGLVYLWGESPNSLESNRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAALYFSNTNKTNSWLTFSANLPSKPRSP ILISDSVFALCDVGSRWRSQWKLFTCTLTNLNNSYNNWVCLGRLEWGDIFDIIKRPRLVRGKGNKLLMIGVLKSNFSLNPSCSTILILRLDLARMEWEEA GRMPSEMYKSFQESSKFKIFGGGDRVCLSAKRVGKLALWDDCDGVVWRWIEGVPGGGDGLCRGFVFEASLTALS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76920			F-box family protein (.1)		Potri.005G190400 [exp]	0	1
AT5G52990			SNARE-like superfamily protein...		Potri.015G012300 [exp]	22.89	0.6191
AT5G01860	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G063800 [exp]	29.52	0.7691
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Potri.014G077100 [exp]	45.98	0.7573
AT4G33780			unknown protein		Potri.001G289600 [exp]	52.64	0.7061
					Potri.018G055900 [exp]	66.35	0.7492
AT4G28820			HIT-type Zinc finger family pr...		Potri.002G252700 [exp]	85.66	0.7252
AT3G55820			Fasciclin-like arabinogalactan...		Potri.010G192300 [exp]	89.62	0.6227
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.006G256300 [exp]	93.91	0.7277
					Potri.005G124601 [exp]	103.37	0.7268
					Potri.003G152950 [exp]	114.09	0.7247

Compare expression of checked genes

Potri.005G190400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.