Plant FIBer expression Database

Potri.005G190500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43710 812 / 0 EMB1075 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
AT1G65960 54 / 8e-08 GAD2 glutamate decarboxylase 2 (.1.2)
AT4G28680 44 / 0.0002 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G069800
[exp]
901 / 0 AT1G43710 790 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.017G144421
[exp]
56 / 4e-08 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1)
Potri.004G075300
[exp]
52 / 4e-07 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1)
Potri.004G075200
[exp]
52 / 4e-07 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028592
[exp]
843 / 0 AT1G43710 789 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10018897
[exp]
833 / 0 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10041434
[exp]
39 / 0.001 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence
>Potri.005G190500.1 pacid=42803821 polypeptide=Potri.005G190500.1.p locus=Potri.005G190500 ID=Potri.005G190500.1.v4.1 annot-version=v4.1
ATGGAAGTTGTTGATGCAGTGTCTGTTCACGTTAACGGGAAGGCTGAGATCGAGGATTTCGATATCTCGGCTGTGGTTCAACCGGAGCCTTTGCCTCCGA
TTGTGGCGGCGGAAAATGGAGATAAGCAAAATGGCAGGGAGATAGTGTTAGGGAAGAACGTGCACACCACGTGCCTCGAAGTCACGGAACCCGAGGCTAA
TGATGAATTTACCGGAGACAAAGAAGCGTATATGGCTAGCGTTTTGGCTCGCTACCGAAAGAACTTAATGGAAAGGACCAAATATCATTTAGGTTATCCT
TATAATTTGGACTTCGATTATGGTGCTTTGGGGCAGTTGCAACATTTCTCCATCAACAATCTGGGCGACCCATTCATTGAGAGTAACTACGGTGTCCATT
CAAGACAGTTTGAAGTTGGTGTTCTAGACTGGTTTGCACGTCTTTGGGAGATTGAGAAAAATGAATACTGGGGTTACATAACTAATTGTGGTACAGAAGG
CAATCTTCATGGGATTCTAGTTGGGAGGGAAGTGTTTCCCGATGGAGTTCTTTATGCTTCACGAGAGTCACATTATTCTGTTTTCAAAGCTGCTCGTATG
TATAGAATGGATTGTGAGAAGGTTGATTGTCTGATCTCTGGCGAGATTGACTGTGCTGATTTTAAAGCTAAACTACTTGCTAACAAGGACAAACCAGCCA
TTATTAACGTTAACATAGGCACAACTGTCAAAGGAGCAGTTGATGATCTTGATCTTGTGATACAAACCCTTGAAGAAAGTGGATTTTCGCAAGATCGATT
CTACATTCACTGCGATGGAGCTTTATTTGGACTCATGATGCCTTTTGTCAAACGTGCACCAAAGGTTACTTTCAAAAAGCCCATTGGAAGCGTTAGTGTT
TCTGGCCACAAGTTTGTGGGATGCCCAATGCCATGTGGTGTTCAGATAACAAGGATGGAGCACATTGATGTTCTCTCGAGAAATGTTGAGTACCTTGCTT
CAAGGGATGCAACAATCATGGGAAGCCGCAACGGCCATGCTCCTATCTTCCTTTGGTACACGCTTAACAGAAAAGGATATAAAGGGTTCCAGAAAGAAGT
ACAGAAGTGTCTCAGAAATGCTCATTACTTGAAGGACCGACTGCATGATGCTGGGATAAGTGCTATGTTGAACGAGCTCAGCAGCACAGTTGTATTTGAG
CGGCCTCTAGATGAGGAATTTGTTCGCAGGTGGCAGCTCGCTTGCCAAGGAAATATTGCCCATGTTGTGGTTATGCCTAGTGTCACAATTGAGAAGCTGG
ATGATTTCTTGAATGAATTAGTTGAAAAACGTTCAATCTGGTATCGGGATGGAGGAGTTCAGCCTCCTTGTATTGCAGCAGATGTAGGTTGTGAGAATTG
TGCTTGTGCTTTGCACAAGTTAAGTATATTATCATGA
AA sequence
>Potri.005G190500.1 pacid=42803821 polypeptide=Potri.005G190500.1.p locus=Potri.005G190500 ID=Potri.005G190500.1.v4.1 annot-version=v4.1
MEVVDAVSVHVNGKAEIEDFDISAVVQPEPLPPIVAAENGDKQNGREIVLGKNVHTTCLEVTEPEANDEFTGDKEAYMASVLARYRKNLMERTKYHLGYP
YNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGVLYASRESHYSVFKAARM
YRMDCEKVDCLISGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSV
SGHKFVGCPMPCGVQITRMEHIDVLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLHDAGISAMLNELSSTVVFE
RPLDEEFVRRWQLACQGNIAHVVVMPSVTIEKLDDFLNELVEKRSIWYRDGGVQPPCIAADVGCENCACALHKLSILS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43710 EMB1075 embryo defective 1075, Pyridox... Potri.005G190500
[exp]
0 1
AT1G34300 lectin protein kinase family p... Potri.019G086300
[exp]
3.00 0.8146
AT5G60920 COB COBRA-like extracellular glyco... Potri.015G060000
[exp]
3.46 0.8017
AT5G26330 Cupredoxin superfamily protein... Potri.009G136200
[exp]
7.74 0.7051
AT2G27770 Plant protein of unknown funct... Potri.004G187600
[exp]
9.79 0.7840
AT3G51740 IMK2 inflorescence meristem recepto... Potri.016G126300
[exp]
10.24 0.7911 Pt-RHG1.4
Potri.004G114450
[exp]
13.85 0.7723
AT3G21100 RNA-binding (RRM/RBD/RNP motif... Potri.001G255400
[exp]
14.49 0.7775
AT2G26700 PID2 PINOID2, AGC (cAMP-dependent, ... Potri.015G093400
[exp]
15.00 0.7538
AT2G38040 CAC3 acetyl Co-enzyme a carboxylase... Potri.016G110500
[exp]
20.00 0.7396 Pt-CAC3.2
AT3G63300 FKD1 FORKED 1 (.1.2) Potri.005G213800
[exp]
21.09 0.7836

Potri.005G190500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.