Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43690 707 / 0 ubiquitin interaction motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069100 [exp] 1019 / 0 AT1G43690 741 / 0.0 ubiquitin interaction motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005002 [exp] 796 / 0 AT1G43690 772 / 0.0 ubiquitin interaction motif-containing protein (.1) Lus10024546 [exp] 785 / 0 AT1G43690 771 / 0.0 ubiquitin interaction motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13898 [poplar] [flax] DUF4205 Domain of unknown function (DUF4205)
Representative CDS sequence Show only first row Show all	>Potri.005G191300.1 pacid=42802768 polypeptide=Potri.005G191300.1.p locus=Potri.005G191300 ID=Potri.005G191300.1.v4.1 annot-version=v4.1 ATGGCGGATCAAGAAGAAGACGACTTGAGAACGGCTCTTAGAATGAGCATGCAAAACTCGCCACCTGAACCTAAGCGGAGCAAGCCGAGGGACGCTGGAG CTCCTGTGGCATCGCCGGAGGATTTGAGGCGGATGAAGCGCGAGCTCATGGCAGCGGCTGCTGAGAAGCGGCTTCTCGAGACGAGAGTTGACTCCCCTTC TCCTTCCCAGTCGCTTTCGCCTTCAAAAGCAACAGTTGATAGAAGCCCTGGTAAAAGTACAGATTTTGTTAGAAAGGAGGTAGATTTTGGTTTGAAGGAG GGGAGTTCGGGAAAGGAATTATCGAGTGAGGAAGCTAATGAGTTGTTTTCGATGGTGTTTGGGAGCGGTGTTTCTAATGACATTCTTGCTCAGTGGAGTA ACCAGGGCATAAGGTTTAGTCCTGATCCAGAAACATCTATGGGACTAGTGCAGCATGAAGGTGGGCCCTGTGGCGTCTTAGCAACTATACAAGCATTTGT TCTCAAACACCTTCTTTTCTTTCCGAATGAAATAGGCAAAGTTACATCAAATGTGCCACAAAATTTGGGCTCTGGAGGATTGTCTAAAAGTCAATATGTT GCATCGGATAATTTCAGTTCTCTTACTGAAGATGCAAAAGCAAGAGCCCTAGTTAAAAGCATGGGTGAGATATTGTTTATGTGCGGAGACAATAAAAGAG CTGTGATTGCTACTTTGAATGCTGTTGGCCTTGACACTGAGGGCTTTGCAAAGAACGAGATCATTGCAAAAGCACTTGAGGGCCTTACAATTGAATCTGC ATCTGATTTGCAAAAAATTCTAAGAATCGACACGTATACATCACAAACAACTGCATTGCAGAAACTCCATACAGCACTTCCTGTTTTCCAATCTCGTATG GGGGCACTACTGTTCCTTATTTCCGCCTTACTGTCCCGAGGATTGGACTCAATTCAAGCTGACAGGGACGATCCCAACCTTCCCCTAGTCACTGCACCTT TTGGGCATGCTTCACAGGAAATTGTGAACCTTCTGCTCTGTGGACAGGCTGTCCCTAACGTGTTTGATGGTAGGATGGACTTCGGTGGAGGCATGTTTCT AAAGGGCATATCCATGAGTGTGGAAGTTGGATTTCTCACACTATTAGAATCTCTCAATTTTTGTAAGGTTGGCCAGCATTTAAAATGCCCGAAATGGCCA ATATGGGTTGTTGGTAGCGAATCTCATTATACAGTTCTATTTGCTCTCGACACCTCGGTTCAGGACGAGAATGAACTGGAAGAAAGAGAGTCGCAGATTC GGAGGGCATTTGATGCACAAGATCAGAGTGGTGGTGGTGGCTTTATCAGTGTTGAAGGCTTCCATCAAGTCCTTAGGGAAGTGGGTATTAGACTTCCATC TGAGAAACTCGATCACCTTTGCAGCACTGGCTTTATTGTATGGAGTGAATTCTGGCAGGTTATTTTGGATCTAGACAAAAGTCTGGGAGGCCTTAAGGAT TCAAGTGGGTTGATGGGTAAGAAGGTGTTTGATCTTTGCCATTTTAATGGGATTGCAAAATCTGATATAAATGGAAGCCACGCAACCTCTGGGGGTGAAA CAATGGTTCAGAGACCTAGACTCACAAAACTGAGGGTTTCAGTTCCACCAAGGTGGACTCCCGAGGAATTCATGGCAGATGTGGTAGTGACGTCTGGCCC TGGTGGGAAGGAATCAAGTGGTAAAGACACTGAGGTGACCAAACCCGAGCCTTCTCAGCATGCACCATTAGTGGACTGTATTAGAACTCGCTGGTCTCGT GCAGTTTGCAATTGGGTGGGGGATCCGCCTAGTATAGTGTGA
AA sequence Show only first row Show all	>Potri.005G191300.1 pacid=42802768 polypeptide=Potri.005G191300.1.p locus=Potri.005G191300 ID=Potri.005G191300.1.v4.1 annot-version=v4.1 MADQEEDDLRTALRMSMQNSPPEPKRSKPRDAGAPVASPEDLRRMKRELMAAAAEKRLLETRVDSPSPSQSLSPSKATVDRSPGKSTDFVRKEVDFGLKE GSSGKELSSEEANELFSMVFGSGVSNDILAQWSNQGIRFSPDPETSMGLVQHEGGPCGVLATIQAFVLKHLLFFPNEIGKVTSNVPQNLGSGGLSKSQYV ASDNFSSLTEDAKARALVKSMGEILFMCGDNKRAVIATLNAVGLDTEGFAKNEIIAKALEGLTIESASDLQKILRIDTYTSQTTALQKLHTALPVFQSRM GALLFLISALLSRGLDSIQADRDDPNLPLVTAPFGHASQEIVNLLLCGQAVPNVFDGRMDFGGGMFLKGISMSVEVGFLTLLESLNFCKVGQHLKCPKWP IWVVGSESHYTVLFALDTSVQDENELEERESQIRRAFDAQDQSGGGGFISVEGFHQVLREVGIRLPSEKLDHLCSTGFIVWSEFWQVILDLDKSLGGLKD SSGLMGKKVFDLCHFNGIAKSDINGSHATSGGETMVQRPRLTKLRVSVPPRWTPEEFMADVVVTSGPGGKESSGKDTEVTKPEPSQHAPLVDCIRTRWSR AVCNWVGDPPSIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43690			ubiquitin interaction motif-co...		Potri.005G191300 [exp]	0	1
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	2.44	0.7560
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.010G254400 [exp]	14.38	0.6600
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Potri.001G344900 [exp]	23.23	0.7026
AT5G48620			Disease resistance protein (CC...		Potri.014G005300 [exp]	32.18	0.6830
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	35.74	0.6792
AT2G47420		DIM1A	adenosine dimethyl transferase...		Potri.014G121200 [exp]	52.24	0.6781
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	56.08	0.6778
AT2G15910			CSL zinc finger domain-contain...		Potri.009G109100 [exp]	57.13	0.6443
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.015G080600 [exp]	57.16	0.6004
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.015G094500 [exp]	75.47	0.6539

Compare expression of checked genes

Potri.005G191300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.