Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SEC5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21170 1420 / 0 SEC5B Exocyst complex component SEC5 (.1) AT1G76850 1417 / 0 SEC5A exocyst complex component sec5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068900 [exp] 1901 / 0 AT1G21170 1490 / 0.0 Exocyst complex component SEC5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011294 [exp] 1545 / 0 AT1G76850 1431 / 0.0 exocyst complex component sec5 (.1) Lus10040488 [exp] 1484 / 0 AT1G76850 1363 / 0.0 exocyst complex component sec5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF15469 [poplar] [flax] Sec5 Exocyst complex component Sec5
Representative CDS sequence Show only first row Show all	>Potri.005G191500.1 pacid=42804445 polypeptide=Potri.005G191500.1.p locus=Potri.005G191500 ID=Potri.005G191500.1.v4.1 annot-version=v4.1 ATGTCAAGCGATAGCGACGATGACGACGAGCTTCTCCAGATGGCGTTAAAGGAACAAGCTCAACGCGATCTCAACTACCAGGGACCGTCGTCGAATCAGC GCAAGCCGGTGGTCAATTTCCTCCAGCAACCGAGGCAACAGCCTCCACCGCAGAGGCCGTCTTCGACGACGAACATGGCGAATCAGCCGCAGCAGCCGAA GAACAGGAGAGCGGTGGAGGAGGAGGATGATTCGGAGGTGGAAATGCTGAGCATATCGAGCGGAGATGAGGAGGTTAGTAAGGATCGTGGCGGTGAAGGA GGTGCGGCAGAGAGAGGGAGAGCTGGACGTGGCAGCGGAGGGAGGGAGGAGGAGAGTGGGTGGGATGGAGAAGAGCCTGATTGTTGGAAAAGAGTTGATG AAGCTGAGCTTTCTCGTAGGGTTCGTGACATGCGAGAGTCGAGAACTGTACCAGTGGCTCAAAAGTTTGAGCGGAAGCCTTCGGCAGTGGCTAGAAAGGG GCTTATCACTCTGCAATCATTTCCCCGTGGCATGGAATGCATTGATCCACTTGGGTTAGGGATTATAGATAACAAATCATTGAGGTTGATCGCTGATTCA TCAGAAAGCTCTCCATCAAAATCTGATAAAGATCATTTGGACAATAACCTTCGTGAGAAGCTGTTGTATTTCTCTGAAAACTTTGACTCAAAGCTATTCC TATCCCGAATACATCAAGATACAAGCGCAGCAGACTTGGAGGCTGGCACACTTGCTTTGAAAACTGATCTCAAAGGACGGACTCAACAGAGAAAACAGTT GGTTAAAGACAATTTTGACTGTTTTGTCTCTTGCAAGACTACAATTGATGATATAGAATCAAAACTGAGACGGATTGAAGAAGATCCTGAAGGTTCTGGG ACTTCTCACCTGTTTAACTGCATGCAAGGAGTAAGCTTGCTGGCCAATCGTGCTTTTGAGCCTCTATTTGAGAGACAGGCCCAAACTGAGAAGATAAGAT CCGTGCAAGGAATGCTTCAGAGATTCCGAACACTGTTTAACTTGCCTAGTACAATTCGTGGGAGCATTGGTAAGGGCGAATATGACTTGGCGGTTAGGGA ATACAAGAAGGCGAAGTCAATTGCTCTACCCTCTCACGTAAACGTACTAAAACGTGTTCTTGAAGAGGTTGAAAAGGTGGTAAATGAGTTCAAAGGCACA CTTTACAAGTCTATGGAAGATCCACAAATAGATCTTACAAATCTTGAGAACACAGTGAGACTGTTGTTGGAGCTGGACCCTGAGTCGGATCCTGTGTGGC ATTATTTTAATGTGCAGAATCACAGAATTCGAGGATTGCTTGAGAAGTGCACCTTAGATCAAGAAGCAAGAATGGAAACTTTGCATAATGAGATGCGTGA AAGAGCTTTCTCTGATGCAAAGTGGAGGCAAATTCAACAAAATGTGAATCAATCTTCAGATGTGAACTATCTCACCCTGGGGAACATCCCTCTGTCAGTA GATTCCCAGCCAGTTGATTTGACTGGTGAAGAAGTTGATGCTCTTAGAGGAAAGTTTATCAGAAGGTTGACTGCTGTGATTACACATCACATACCAGCTT TTTGGAAAGTTGCTCTCTCTGTTTTCAGTGGGAAATTTGCAAAGTCTTCCCAAGTTTCTGCTGAATCAAATGTTAATGCTTCAGCAACTAAAAGCAAGGA AAAGATTGGAGATGGGAGGTACTCTAATCATTCTCTCGATGAAGTTGCTGGTATGATACGAGGTACCATATCTGCATATGAAACTAAGGTTCATAACACT TTCCGTGATCTTGAAGAATCAAACATTCTCCGGTCTTATATGAGTGATGCTATAAAGGAAATATCTAAGGCCTGCCAAGCTTTCGAAGTGAAAGAATCAG CTCCATCTACTGCTGTGATGGCACTTAGAACCCTTCAGGCAGAGATGACAAAGATTTACATACTTAGGCTTTGCTCTTGGATGCGGACAACGGCAGAAGA GATATCAAAAGAAGAAACTTGGATTCCAGTATATATTCTTGAAAGAAATAAATCTCCATACACAATTTCTTTCTTGCCTCTAGCGTTCCGCTCAGTTATT GCCTCTGCAATGGATCAAACCAGTCAAATGATTCAGTCCTTGAGGAGCGAGGCTGGAAAGTCAGAAGATATGTTTGCACTGCTACAAGAAATTGAAGAAT CTGTCCGACTTACCTTCTTAAACTGTTTCCTCTATTTTGCTGGCCATTTGGAACAAATCGGAAGTGAGCTTGCCCTTAACAAATCAAGCAAAGAAAGTTT GCATTTACAGAATGGGTATTCTCATGAATCAGAAGAAAAATCATCATCTGATCTCGAAGGTAGTATTGTTGATTCACATCAACAATTGCTGTTAGTTTTG AGTAATATTGGATACTGCAAAGACGAACTTTCATATGAGTTGTTCAACAAGTATAAAACGATATGGTCGCAGTCCAGGGGAAAGGATGAAGAGGACAGTG ATATTCAGGATCTAGTGATGTCTTTCTCTGGACTTGAAGAGAAGGTCCTTGCTCAGTATACTTTTGCAAAGGCAAATTTGATCAGAACAGCAGCTATGGA TTATTTGCTGAACTCTGGTGTTCAATGGGGAGCAGCTCCTGCAGTTAAAGGTGTGCGTGATGCGGCGGTGGAGTTATTACACACTTTAGTAGCTGTGCAT TCAGAGGTTTTTGCTTGTGCTAAACCCCTCCTGGACAAGACACTTGGCATTCTAGTTGAAGGTCTTATCGATACTTTTCTGAGCCTTTATGATGAAAACA AAAGCAAAGATCTTAGGTCTCTTGATGCAAATGGCTTCTGTCAGCTCATGTTCGAGCTGGAATATTTCGAGACCATATTAAATCCCTATCTCACACCTGA TGCAAGGGAGTCTCTTAAGTCCTTACAAGGGATGCTGTTGGAGAAAGCCACTGAGAATGTCACCGAAACTGTTGAGAATCCAGGTCATCAACGCAGATCA ACTCGTGGGAGCGAAGATGCACTTGCAGATGACAGGCAGCAAGGAATGACCGTGTCTCCAGATGACTTGATTGCTCTTGCTCAGCAGTGTAGCTCTGAGT TGCTTCAATCAGAGCTTGAGAGGACTCGTATCAATACAGCATGTTTTGTTGAGTCGATTCCCTTGGACTCGGTACCAGAATCAGCTAAAGCTGCCTATTC CTATAGAGGATCAATGGATTCCTCCAGAAACTTCATGGATTCCCCTGGAAGAAACCATAGAGGCACACAAGCAATGGGTTCCCCTAGTTTCTCTCGTCAC AGGCGTCGATGA
AA sequence Show only first row Show all	>Potri.005G191500.1 pacid=42804445 polypeptide=Potri.005G191500.1.p locus=Potri.005G191500 ID=Potri.005G191500.1.v4.1 annot-version=v4.1 MSSDSDDDDELLQMALKEQAQRDLNYQGPSSNQRKPVVNFLQQPRQQPPPQRPSSTTNMANQPQQPKNRRAVEEEDDSEVEMLSISSGDEEVSKDRGGEG GAAERGRAGRGSGGREEESGWDGEEPDCWKRVDEAELSRRVRDMRESRTVPVAQKFERKPSAVARKGLITLQSFPRGMECIDPLGLGIIDNKSLRLIADS SESSPSKSDKDHLDNNLREKLLYFSENFDSKLFLSRIHQDTSAADLEAGTLALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLRRIEEDPEGSG TSHLFNCMQGVSLLANRAFEPLFERQAQTEKIRSVQGMLQRFRTLFNLPSTIRGSIGKGEYDLAVREYKKAKSIALPSHVNVLKRVLEEVEKVVNEFKGT LYKSMEDPQIDLTNLENTVRLLLELDPESDPVWHYFNVQNHRIRGLLEKCTLDQEARMETLHNEMRERAFSDAKWRQIQQNVNQSSDVNYLTLGNIPLSV DSQPVDLTGEEVDALRGKFIRRLTAVITHHIPAFWKVALSVFSGKFAKSSQVSAESNVNASATKSKEKIGDGRYSNHSLDEVAGMIRGTISAYETKVHNT FRDLEESNILRSYMSDAIKEISKACQAFEVKESAPSTAVMALRTLQAEMTKIYILRLCSWMRTTAEEISKEETWIPVYILERNKSPYTISFLPLAFRSVI ASAMDQTSQMIQSLRSEAGKSEDMFALLQEIEESVRLTFLNCFLYFAGHLEQIGSELALNKSSKESLHLQNGYSHESEEKSSSDLEGSIVDSHQQLLLVL SNIGYCKDELSYELFNKYKTIWSQSRGKDEEDSDIQDLVMSFSGLEEKVLAQYTFAKANLIRTAAMDYLLNSGVQWGAAPAVKGVRDAAVELLHTLVAVH SEVFACAKPLLDKTLGILVEGLIDTFLSLYDENKSKDLRSLDANGFCQLMFELEYFETILNPYLTPDARESLKSLQGMLLEKATENVTETVENPGHQRRS TRGSEDALADDRQQGMTVSPDDLIALAQQCSSELLQSELERTRINTACFVESIPLDSVPESAKAAYSYRGSMDSSRNFMDSPGRNHRGTQAMGSPSFSRH RRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.005G191500 [exp]	0	1	SEC5.1
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	1.00	0.8516
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	1.41	0.8426
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	2.00	0.8231
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063201 [exp]	3.46	0.8251
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	5.74	0.7778
AT3G01380			transferases;sulfuric ester hy...		Potri.001G350700 [exp]	7.74	0.8039
AT3G50430			unknown protein		Potri.005G133500 [exp]	15.19	0.7968
AT5G18420			unknown protein		Potri.004G092400 [exp]	18.97	0.7793
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	19.07	0.7626
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Potri.004G022500 [exp]	19.59	0.7027

Compare expression of checked genes

Potri.005G191500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.